KEGG   Phocaeicola vulgatus: BVU_1293
Entry
BVU_1293          CDS       T00546                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
bvu  Phocaeicola vulgatus
Pathway
bvu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bvu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BVU_1293
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bvu03019]
    BVU_1293
   03009 Ribosome biogenesis [BR:bvu03009]
    BVU_1293
Enzymes [BR:bvu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BVU_1293
Messenger RNA biogenesis [BR:bvu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BVU_1293
Ribosome biogenesis [BR:bvu03009]
 Prokaryotic type
  rRNA helicases
   BVU_1293
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: ABR38983
UniProt: A6KZW9
Position
complement(1743316..1745190)
AA seq 624 aa
MKTFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP
LIQKVDVKHRAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRMLK
TGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKVPEDRNT
LMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRIADYY
PQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLLVATD
VAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKMREIERI
INKKFIMGEMPSGKQICEQQLIKLIDDIEKVKVNDEEIESFLPGIYRKLEWLSKEDLIKR
VVSMEFNRFLEYYSNAPEIEIPSTNDRRSERGSKERKDHGSAREKTERKAEKGYTRLFLN
VGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAENQAQDVIKALNKVNLNG
GRKIVVEVAGDNNGKNDNGERRSSAARNASFGKKSDRSNKKTTSKEGRPSRAERGYIEER
GPKTKDDWKQFFNSDNNKKKKSKK
NT seq 1875 nt   +upstreamnt  +downstreamnt
atgaagacatttgaagagttaggcgtttccccggaaatactaaaagcgattaaagaaatg
ggatatgagaatcccatgccggtacaagaagaagtaataccgtatttattgggaaacggc
aacgatgtagtagccctagcacaaacagggactggaaaaacagccgcatttggtctgccg
cttatccaaaaagttgacgtaaaacaccgtgcacctcaagcactaattttatgccccaca
cgcgaattgtgcttgcagattgcaggcgatctgaacgattactccaagtacattgacggg
ctgaaaatccttcccgtatatggtggttcatccatcgaaagccaaatacgcatgttgaaa
acaggcgtacatattattgtggctactcccggacgactgattgatctaatagaaagaaag
gttgccaaactagaaacaattacagatgtagtaatggacgaagccgatgaaatgctgaat
atgggatttactgatagcataaatgctatccttgaaaaagttcctgaagatcggaatacc
ttgatgttctcggctaccatgagtccggaaatctcacgcatcgccaaaaaatatctgcat
gacgcaaaagaaatcactatcggtaccaaaaatgagggcagtaaaaacgtcaatcacata
gcctatttagtacacgctaaagacaaatatgccgcattgaaacgtatcgcggattattat
ccacagatttatggcatcattttctgtcgtacccgtaaagaaactcaggaaattgcagat
aaattaatacaagacggttataacgcagactctttgcacggtgagctctcacaagcccag
cgcgacttagtgatgcaaaaattccgccaacgccatttacagcttttagttgctaccgac
gtagcagcccgtggcctagatgtaaatgaccttactcatgtcattaattatggcttgccc
gatgatatagaaagctatactcatcgtagtggtcgtacaggacgtgccggaaaaacaggt
atttctattgccatcatcaacctgcgcgaaaaaggcaagatgcgtgagatagaacgaatc
atcaacaaaaaatttatcatgggtgagatgcccagtggtaaacaaatttgcgagcagcaa
ttgattaaattgatagatgacatagaaaaggtaaaagtaaacgatgaagaaattgaatcc
ttcctacccggaatctatcgtaaactggaatggctttcaaaggaagatctgataaagcgc
gtggtgtcaatggaatttaaccgcttcttggaatactatagtaacgctccggaaatagaa
attcccagcacaaatgaccgtcgcagcgaacgtggctccaaagaacgcaaggatcatggc
agtgctcgtgaaaagacagagcgtaaagcagaaaaaggatacacccgtctattcctgaat
gtaggaaagacagacggtttctatgccaaccaaatcatagaactgattaaccgcaacatg
aagaagcaacgtactaccatcggacgaatagacctgatgcagaatttctctttcttcgaa
gtagcagaaaatcaggcacaggacgtgattaaagcattgaacaaggttaatctgaatggc
ggccggaaaattgtagtagaagttgccggtgacaataatggcaaaaacgacaatggcgaa
cgcagaagcagtgcagcaaggaatgcttcattcggcaaaaaaagtgacaggtccaataaa
aaaacgacctcaaaagaaggaagacccagccgtgcggaacgtggctacattgaagaacgc
ggtcccaaaacgaaagacgactggaaacaattctttaacagcgataacaataagaaaaag
aaatccaagaaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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