KEGG   Burkholderia sp. YI23: BYI23_A024550
Entry
BYI23_A024550     CDS       T01711                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
byi  Burkholderia sp. YI23
Pathway
byi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:byi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BYI23_A024550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:byi03021]
    BYI23_A024550
   03400 DNA repair and recombination proteins [BR:byi03400]
    BYI23_A024550
Enzymes [BR:byi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BYI23_A024550
Transcription machinery [BR:byi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BYI23_A024550
DNA repair and recombination proteins [BR:byi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BYI23_A024550
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 UbiD
Other DBs
NCBI-ProteinID: AET90293
Position
1:complement(2752709..2756815)
AA seq 1368 aa
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFQTFLQADTSSSQRKAEGLQAAFSSV
FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGMTPEQILANFFVFDNFGLMSE
GAQMEFVPERLRGEVARFDIQDRDGNVIVTKDKRINAKHIRDLENAKTKFISVPEEYLLG
RVLAKNVIDPETGEVIANANEEITETVLEKLREAKVKDIQTLYTNDLDQGPYISSTLRID
ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
IGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGVVDYVDAGRIVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIAKVG
DKVARGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGITRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFSRLARMLNGKVANGGPKKLAKGTAIDLAYLEDLDHYHWFDIR
LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQILEVHLGWAA
KGLGWRIGEMLQRQTKIEELRMFLTQIYNESGRKEELDSFSDDEILELAKNLREGVPFAT
PVFDGATEEEMGRALDLAYPDDIATNLGMNPSKNQVQLHDGRTGEPFERKVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq 4107 nt   +upstreamnt  +downstreamnt
atgcaatattccttcaccgagaagaagcgtattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttcccttcttgctggcgacccagcttgaatcattccagacgtttctgcaa
gcagacacgtcttcttcgcagcgcaaggcagaaggcttgcaggctgcgttcagctcagtt
ttcccgattgtctcgcacaacggcttcgcgcggctcgagttcgtcagctacatgctgtcg
ccgcccgcgttcaacatcaaggaatgtcagcagcgtggcctgacgtactgctcggcgctg
cgcgcgaaagtgcgcctggttctgctcgacaaggaatcgcccagcaagccggtcgtcaag
gaagtgaaggaacaggaagtctacatgggcgaaattccgctcatgacgccgacgggttcg
ttcgtcatcaacggcaccgagcgcgtgatcgtgtcgcagctgcaccgttcgcctggcgtg
ttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctgttctcggcgcgc
atcatcccttaccgtggttcgtggctcgatttcgagttcgatccgaaggacgtgctgtac
ttccgcgttgaccgtcgtcgcaagatgccggtcacgattctgctgaaagccatcggcatg
acgccggagcagatcctcgcgaacttcttcgtgttcgacaacttcggcctgatgagcgaa
ggcgcgcagatggaattcgttccggagcgtctgcgcggtgaagtcgcgcgcttcgacatt
caggatcgcgatggcaatgtcatcgtgacgaaggacaagcgcatcaacgcgaagcacatt
cgcgatctcgaaaacgccaagacgaagttcatctcggtgcccgaggaatatctgctcggc
cgcgtgctggcgaagaacgtgatcgatccggaaacgggcgaagtgatcgcgaacgccaac
gaggaaatcaccgaaacggttctcgaaaagctgcgcgaggcgaaggtcaaggacatccag
acgctgtacacgaacgatctggatcagggtccgtacatctcgtcgacgctgcgtatcgac
gaaactgccgacaagatggccgcgcgcatcgcgatctaccgcatgatgcgtccgggcgag
ccgccgaccgaagaagcggtcgaggccctgttcaaccgtctgttctacagcgaagacgcg
tacgacctgtcgaaggtcggccgtatgaagttcaaccgccgcgtgggtcgcgatgaaatc
atcggaccgatgacgctgcaggacgacgacatcctcgcgaccatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgatatcgatcacctcggcaatcgtcgcgtgcgt
tgcgtcggcgaactcgcggagaatcagttccgcgctggtctcgtgcgtgtcgagcgcgcg
gtgaaggaacgcctcggccaggccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgattcgcgagttcttcggttcgtcgcagctttcgcagttc
atggaccagaccaacccgctgtcggaaattacgcacaagcgtcgcgtgtccgcactgggc
ccgggcggtctgacgcgcgagcgcgcgggcttcgaagtccgcgacgtgcatccgacgcac
tacggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctggcgctgtatgcgcacctgaacgaatacggcttcctcgaaacgccgtaccgaaaggtc
gtggacagcaaggtgaccgaccagatcgactatctgtcggcaatcgaagaaggccgctat
gtgatcgcgcaggcgaacgcggcagtggccgaagacggcacgctgaccgacgaactcgta
tcgtcgcgtgaagcgggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtctcggtggctgcatcgctgattccgttcctcgaacacgac
gacgcgaaccgcgcgttgatgggctcgaacatgcagcgtcaggccgtgccttgcctgcgt
ccggaaaagccggtcgtcggtacgggcatcgagcgcacggttgcggtcgactcgggcacg
acggttcaggcgctgcgtggcggcgtcgtcgattacgtcgacgcgggccgtatcgtgatt
cgcgtgaatgacgacgaagccgtggccggcgatgtcggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgcgaaggtcggc
gataaggttgcgcgcggcgacgtgctggctgacggcgcatcgaccgatctgggcgaactc
gcgctcggccagaacatgctggtcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatctcggagaaggtcgttgcggacgatcgctacacgtcgatccacatcgaa
gaactgaatgtcgttgcgcgcgacacgaagctcggaccggaagaaatcacgcgcgatatc
tcgaacctcgcggaagtgcagcttggccgtctggacgagtcgggcatcgtgtacatcggc
gcggaagtcgaagcgggcgacgtgctcgtcggtaaggtcacgccgaagggcgaaacccag
ctgacgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcatcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcacggtcatcgacgtgcaagtgttc
acgcgcgaaggcatcacgcgtgacaagcgcgcgcaacagatcatcgacgatgaactgaag
cgttatcgcctcgatttgaacgaccagttgcgtattgtggaaggcgacgcgttctcgcgt
ctcgcacgtatgctgaacggcaaggtcgcgaacggcggtccgaagaagctcgcgaagggc
acggcaatcgacctcgcgtacctcgaagatctcgaccactaccactggttcgacatccgc
ctcgcggacgaagaagcggcggcacagctggaagcgatcaaggattcgatcgagcagaag
cgtcaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtatctcgcggtcaagcgtcgtctgcag
cctggcgacaagatggcgggccgtcacggcaacaagggtgtcgtgtcgaagatcgtgccg
atcgaagacatgccgtacatggccgatggccgtccggccgacgtcgtgctgaatccgctc
ggcgtgccgtcgcggatgaacgtgggtcagattctcgaagtgcatctgggctgggccgcg
aagggtctgggctggcgcatcggcgaaatgctgcagcgtcagacgaagatcgaagaactg
cgcatgttcctgacgcagatctacaacgagtccggccgcaaggaagagctggacagcttc
tccgacgacgagatcctcgaactcgcgaagaatctgcgcgaaggcgtgccgttcgccacg
ccggtgttcgacggtgcgaccgaagaggaaatgggccgcgcgctggatctggcgtacccg
gacgatatcgccacgaacctcggcatgaacccgtcgaagaatcaggttcaactgcacgat
ggccgcacgggcgaaccgttcgagcgcaaggtcacggtcggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggcggccagcgcttcggtgagatggaa
gtgtgggcgctggaagcgtacggcgcatcgtatgtgctgcaagaaatgctgacggtcaag
tcggacgacgtcaccggccggacgaaggtgtatgagaacctcgtcaagggcgatcacgtc
atcgacgcgggcatgccggaatccttcaacgtgttggtgaaggaaatccgctcgctcggt
attgatatcgatctggaccgcaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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