KEGG   Bipolaris zeicola: COCCADRAFT_40509
Entry
COCCADRAFT_40509  CDS       T03110                                 
Name
(RefSeq) hypothetical protein
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
bze  Bipolaris zeicola
Pathway
bze03020  RNA polymerase
bze03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    COCCADRAFT_40509
  09124 Replication and repair
   03420 Nucleotide excision repair
    COCCADRAFT_40509
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bze03021]
    COCCADRAFT_40509
   03400 DNA repair and recombination proteins [BR:bze03400]
    COCCADRAFT_40509
Transcription machinery [BR:bze03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     COCCADRAFT_40509
  RNA polymerase III system
   RNA polymerase III
     COCCADRAFT_40509
  RNA polymerase I system
   RNA polymerase I
     COCCADRAFT_40509
DNA repair and recombination proteins [BR:bze03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      COCCADRAFT_40509
SSDB
Motif
Pfam: DNA_RNApol_7kD MCM_OB zinc-ribbon_6 HypA Zn_Tnp_IS1595 zinc_ribbon_13 YjdM_Zn_Ribbon DUF951 DUF35_N
Other DBs
NCBI-GeneID: 19149275
NCBI-ProteinID: XP_007716625
JGI: 40509
UniProt: W6YD24
Position
Unknown
AA seq 68 aa
MSQQYSGGNTADNQPTTVDATARTVHYKCGDCDMDVPLKRGEPIRCRNCGHRVLYKQRTN
RMVQFEAR
NT seq 207 nt   +upstreamnt  +downstreamnt
atgtcacaacaatactcaggcggcaacaccgcagacaaccaacccacgaccgtcgacgca
accgcccgaaccgtccactacaagtgcggcgactgcgacatggacgtcccgctcaagcgc
ggcgagccaatccgctgccgtaactgcggtcatcgcgttttgtacaagcagagaacgaac
cgtatggtgcagtttgaggcgcgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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