KEGG   Chlamydia abortus S26/3: CAB660
Entry
CAB660            CDS       T00242                                 
Symbol
rpoC
Name
(GenBank) putative DNA-directed RNA polymerase beta' chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cab  Chlamydia abortus S26/3
Pathway
cab03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CAB660 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cab03021]
    CAB660 (rpoC)
   03400 DNA repair and recombination proteins [BR:cab03400]
    CAB660 (rpoC)
Enzymes [BR:cab01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CAB660 (rpoC)
Transcription machinery [BR:cab03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CAB660 (rpoC)
DNA repair and recombination proteins [BR:cab03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CAB660 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl Mei5 HetE-N
Other DBs
NCBI-ProteinID: CAH64107
UniProt: Q5L5I4
Position
complement(766187..770368)
AA seq 1393 aa
MFGEGSRDNVALSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVLIVHIWFFK
TTPSRIGNVLGMTASDLERIIYYEEYVVIDPGKTDLNKKQLLNDAQYREVIEKWGKDSFV
AKMGGEAIYDLLKSEDLQSLLKELKDRLRKTKSQQARMKLAKRLKIIEGFVSSSNHAEWM
VLKSVPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYFPEDHGGKIKIFKDVTEV
LRALYSGGFLDEHTDGRRDETGRGIHIHEKIKVRIDGQVIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLKDVKIPEIKSE
ILKEAYDKVAIVKKQYDDGIITDGERHSKTISIWTEVSELLSDALYVEISKQTKSKHNPL
FLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKG
LADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLNHIEITAIRQGSEELLPLKDRIYGR
TVSEDIYQPGDKSKLLAENGDVITSAQAELIDDAGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVTNCDGILVYID
LRVVVGQDGNHLVLNKKGAIHVVRDEGRSLEEYKKLLSTKSIESLETYPVELGVKILVGD
GEKVTAGQRIAEVELHNIPIICDKPGFVKYEDLVEGISTEKVANKNTGLVELIVKQHRGE
LHPQIAIYSDPGLTELVGTYAIPSGAIVSVEENQKVDPGMLLARLPRGAIKTKDITGGLP
RVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLIPLTKHLIVQ
RGDHVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQ
MLQKVRITDPGDTTLLFGEEVNKKEFYEENKRTEEEGGKPAQAVPVLLGITKASLGTESF
ISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQYLEKEQEE
LVFDFVSESECAC
NT seq 4182 nt   +upstreamnt  +downstreamnt
atgttcggagaaggttctcgagacaatgtcgctctatctaaagaggggctatttgataaa
ttagaaattggaattgcctcagatattactattcgtgataagtggtcttgtggggaaatc
aagaaacctgaaacaatcaattaccgtacgtttaaacctgaaaaaggtggactattttgc
gaaaagatttttggtcctacaaaggactgggaatgctgttgtggtaaatacaagaagatc
aaacataaaggtattgtttgtgatcgctgcggagtagaggtgactctttctaaggttcgt
cgtgaacgtatggctcatattgagttggcagtacttatcgtacatatatggttttttaag
actacaccttcaagaataggtaacgtcttaggaatgaccgcttctgatcttgaaaggatt
atttattacgaagaatatgtagttatcgatccaggtaaaacagatttaaataaaaagcag
cttttaaatgatgctcaatatcgagaagtcatcgagaagtgggggaaagattcctttgta
gctaaaatgggcggagaggctatctatgatttgttgaaatcagaagatctccaaagttta
ttaaaggagcttaaggatcgtctgcgaaaaaccaaatctcagcaagccagaatgaaactt
gctaagcgattgaaaattatcgaaggttttgtctcttcttcgaaccacgctgagtggatg
gttttaaaaagcgttcctgttgttccacccgatctgcgtcctttggttccattagatggt
ggaaggtttgctacttctgatttaaatgatttataccgtcgtgtaattaaccgaaataat
cgtctaaaagctattttaaggctaaaaactcctgaagtgatcgttcgtaatgaaaaacgt
atgctacaggaagctgtggacgctctatttgataacggtcgtcatggacaccctgtgatg
ggagctgggaaccgtccattaaaatccctttctgaaatgttgaaagggaaaaatggacgt
ttccgacaaaatcttttaggtaagcgtgtggactattctggacgttctgtcattatcgtg
ggtccagaattgaagtttaatcaatgcggtttgcctaaagaaatggctcttgaattgttt
gaacccttcattattaaaagattaaaagatcagggtagtgtctatactattcgttctgct
aagaaaatgattcaacgcggagctcccgaagtttgggatgttctagaagaaattattaaa
ggccatcccgtattgcttaaccgagctcctacactccaccgcttaggaatacaggcgttt
gaacctgtattaattgaaggtaaagcgattcgtgtgcatcccctagtctgcgcagcattt
aacgcggacttcgatggagatcaaatggctgttcacgtgccactgtctatagaagcgcaa
ttagaagccaaagttttgatgatggctcctgataacatcttcttgccatcttctggaaag
cctgtcgctacaccttctaaggatatgaccttaggtatttactatcttatggcagacccg
acatattttcccgaagatcacggaggaaaaatcaagatctttaaggacgttacggaagtc
ttgcgagccttgtattctggcggattcctagatgaacatacggatggtcgtcgcgatgaa
acaggtcgtggtattcatattcacgagaaaattaaagtacgcatcgatggtcaagtgatt
gaaacgactccaggaagagttctgtttaatagaattgttcctaaagagttagggttccaa
aactacagcatgccaagtaagcgtatcagtgaattgattttacaatgctataagaaagtg
gggctggaagctactgtacgcttcttagatgatctcaaggacttaggatttatccaagcc
acaaaagcggcgatctctatgggattgaaagatgtaaaaattcctgagattaaaagtgaa
attcttaaagaagcttatgacaaggttgccattgttaagaaacaatacgatgatggtatt
atcaccgatggcgaacgtcattctaaaacgattagtatttggactgaagtttcagaactc
ttatccgatgctctgtatgttgaaattagtaagcaaactaaaagcaaacataaccctctg
ttcttgatgatagattcaggagctcgaggtaacaagtctcagttgaagcagttgggagct
ttacgaggtttaatggcgaagccaaacggtgcgattatcgaatccccgattacctctaat
ttccgcgaaggattaaccgttcttgagtattccatttcttctcacggtgctagaaaaggt
ttagctgatactgcattgaaaacagcggattctgggtatttaactcgaagacttgttgac
gtagctcaagatgtcatcattaccgaaaaagattgcggaacattgaatcatatcgaaatt
actgcaattcgccagggttcagaagagctgttacctttaaaagatcgtatttatggtcgt
acggtatcagaagatatctatcaacctggtgataaaagtaagcttctggctgagaatggc
gatgtgattacatctgctcaggctgaactgattgatgacgcaggaattgaaagtattaaa
attcgctccacacttacttgtgaaagtcgccgtggtgtctgcgctaagtgttacgggtta
aaccttgctaatggtcgcctgattggtttgggagaagctgtcggtattatagccgctcaa
tccattggtgaacctggaacacagctaacaatgagaacgttccaccttggaggtatcgca
gcgacatcttcaactccagaaattgttacaaactgtgatggtatcctagtatacatagat
ctacgtgttgttgtgggtcaagatggaaatcacttggtcttgaataagaaaggcgctatc
catgttgtccgtgatgaaggacgtagtttagaagaatacaagaaacttctaagcaccaag
tctatagaaagtttagagacttatccagtagagctcggtgtgaagattttagtaggtgat
ggggagaaggtaactgcaggccaaagaattgctgaggtcgaattacataatattccaatt
atttgtgataagcctggttttgtaaaatacgaagacttagtagagggtatttctacagaa
aaagtagctaacaaaaacacaggtttagtcgagcttattgttaaacagcatcgtggagaa
ctacatcctcaaattgctatttattctgatcctggtttgacagaattggttggaacatac
gcgattccttctggagcgattgtttctgtcgaagaaaatcaaaaagttgatccggggatg
ttattagcaagattacctcgaggagccattaagactaaggatattaccggggggctacct
agggttgctgaattagttgaagctcgtaagcctgaagacgctgcagatattgcaaagatt
gatggtgttgtagactttaaaggaattcagaaaaataaacgtattcttgttgtccgtgac
gaaatcacaggaatggaagaagaacacctgattccgttgaccaaacacttaattgttcaa
cgtggagatcatgtaatgaaaggacagcagctaacagatggcttggttgttccacatgag
atcctagaaatttgcggtgtgcgcgaattgcagaaatatttagtgaatgaggttcaagaa
gtttatcgtctacaaggtgtggacattaatgataagcatgtggaaatcattgttcgtcaa
atgttgcagaaggttcgcattactgacccaggtgatactactttactcttcggggaagaa
gtgaataaaaaagaattctacgaagaaaataaacgtactgaagaggaaggtggaaaacca
gcacaagctgttcctgtattattgggaattaccaaagcttccttgggtacagaatcgttt
atttctgccgcatccttccaagatacgacgcgggtattaactgatgcagcgtgtagtagt
aaaactgactacctattaggattcaaagagaatgtcattatgggacacatgattcctgga
ggtacagggtttgatacacataagcgcattaagcagtacttagaaaaagaacaagaggaa
cttgtctttgactttgtaagtgagtctgaatgcgcttgttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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