KEGG   Clostridium acetobutylicum DSM 1731: SMB_G2708
Entry
SMB_G2708         CDS       T01548                                 
Symbol
ligA2
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cae  Clostridium acetobutylicum DSM 1731
Pathway
cae03030  DNA replication
cae03410  Base excision repair
cae03420  Nucleotide excision repair
cae03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SMB_G2708 (ligA2)
   03410 Base excision repair
    SMB_G2708 (ligA2)
   03420 Nucleotide excision repair
    SMB_G2708 (ligA2)
   03430 Mismatch repair
    SMB_G2708 (ligA2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cae03032]
    SMB_G2708 (ligA2)
   03400 DNA repair and recombination proteins [BR:cae03400]
    SMB_G2708 (ligA2)
Enzymes [BR:cae01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SMB_G2708 (ligA2)
DNA replication proteins [BR:cae03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SMB_G2708 (ligA2)
DNA repair and recombination proteins [BR:cae03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SMB_G2708 (ligA2)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SMB_G2708 (ligA2)
   MMR (mismatch excision repair)
    DNA ligase
     SMB_G2708 (ligA2)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SMB_G2708 (ligA2)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT HHH 5_3_exonuc HHH_3 DNA_ligase_ZBD BRCT_2 RNA_pol_A_CTD POLH-Rev1_HhH zf-ribbon_3 PATR
Other DBs
NCBI-ProteinID: AEI33640
Position
complement(2791177..2793186)
AA seq 669 aa
MNEKESNILRMQELIEELNKYSYSYYVLDNPIVADKEYDKRYDELVELEEKTGITYPYSP
TNRVGDVILKQFQKYTHKSRLWSLDKAQSFEEIIDWHNRNKKAVAEYNSNHEDKLPELKY
VLTKKFDGLTINCTYDESGVMIKAATRGTGVIGEDITSQAKTIKSIPLKIKNGSVVEVHG
EAIMTKTAFNEYNKKAEVPLKNLRNGAAGALRNLNVRETARRNLSAFFYDVGYNEGKAFK
SYMEMMNFIKEMGFPVDEYLKECNTIEEINKEIQYVGDIRSSLDYDIDGVVIVIDDYRTR
EYLGYTVKFPKWAIAYKFEAEEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVIVKRAT
LNNMDDIGRKKVKIGSRVFVRRSNDVIPEIMGVTEETEGETNEIEAPTICPYCGSEIVKE
GVHLFCENTLSCKPQMVKSIVHFASREAMNIEGFSEKTAEQLFEKLNIKSISDLYRITKE
ELMSLDKFKDKKASNLINAIEKSKKCDLASFVYSLGIPNVGKKTATDLCKQFKSFENIKK
ASYDELILVQDIGSIVAESIVEFFKQEKIEKSLNELFELGVTPFYEESEVVENAFTGKTV
VATGTLQNYSRTAIKEKLESLGANVAGSVSKKTDYVIAGENAGSKYDKAVQLGVKILTEE
EFEELINNM
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgaacgaaaaagaatcaaatattttaagaatgcaggaacttatagaggaactaaataaa
tattcatatagctattatgtattggataatccaattgtagcagataaagaatatgataag
agatatgatgaacttgtagaacttgaggaaaaaacgggtataacatatccttattcacca
acaaatagagttggtgatgtcattttaaaacaatttcaaaagtatacacataaaagtagg
ctttggagtcttgataaggcacaaagctttgaagaaatcatagattggcacaacaggaat
aaaaaggcagtggctgaatataatagtaaccatgaagataagcttccagagcttaaatat
gttttaactaaaaaatttgacggacttactataaactgcacatatgatgagagcggtgtt
atgataaaagctgctacacgtggaactggagttataggtgaggacataactagtcaagca
aagactataaaatctataccacttaagataaaaaatggctctgtggttgaggtacatgga
gaagcaataatgactaaaactgcttttaatgagtataataaaaaagcagaagtacctctt
aagaatttgagaaatggtgcagcaggagcacttagaaatctaaatgtaagagaaactgca
agaagaaatctatcggcttttttttacgatgttggatataatgaaggtaaagcctttaaa
tcctacatggaaatgatgaatttcataaaagagatgggatttccagttgatgaatattta
aaagagtgtaatactattgaagagataaataaagaaattcaatatgtaggagatataaga
agtagtcttgattatgatatagatggagttgtaatagtaattgatgactatagaacaaga
gaatatcttggatataccgtaaaattcccaaagtgggcaatagcctataagtttgaggca
gaagaagctacaacaaagcttttggatgttgaatggaacgttggaagaagtggaagagtt
agtccaacggcaattttagagcctgtagagctagcaggagtaattgtaaaaagagctaca
ttaaataatatggatgacataggaagaaaaaaagttaagataggttcaagagtttttgta
agaagatcaaatgatgtaataccggaaattatgggagttacagaagagacagagggagaa
acgaatgaaatagaagcaccaacaatatgcccatattgcggcagtgaaatagtaaaagaa
ggtgtacatttattttgtgaaaatactttgtcctgtaaacctcaaatggtaaaaagtata
gttcattttgctagcagagaagctatgaatatagaaggctttagtgagaaaacagcagaa
caattatttgagaaattaaacataaaaagtatatctgacttatatagaataactaaagaa
gaattaatgtcattggataagtttaaagataaaaaggctagtaatcttataaatgctata
gagaaaagtaaaaaatgtgatcttgcgtcttttgtttactctctcggtataccaaatgta
ggtaagaagacagctacagatttatgcaagcaatttaaaagctttgagaacataaaaaaa
gcttcctatgatgaacttattttagttcaagatataggctcaattgttgcagaaagtatt
gttgaattctttaaacaggaaaaaatagagaaaagtcttaatgaattatttgaacttgga
gtaactccattttatgaagaaagtgaagttgttgaaaatgcatttacaggcaaaaccgta
gttgcaacaggaacgcttcaaaactacagtagaacagcaataaaggaaaagttagagagt
cttggagctaatgtagcaggaagtgttagtaaaaaaactgattatgtgatagctggtgaa
aatgctggttctaaatatgataaggcagttcaacttggagttaagatattaacagaagag
gaatttgaagaattaataaataatatgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (34)   

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