KEGG   Clostridium acetobutylicum DSM 1731: SMB_G2890
Entry
SMB_G2890         CDS       T01548                                 
Symbol
yrrC
Name
(GenBank) exodeoxyribonuclease V, Alpha subunit, RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
cae  Clostridium acetobutylicum DSM 1731
Pathway
cae03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SMB_G2890 (yrrC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cae03400]
    SMB_G2890 (yrrC)
Enzymes [BR:cae01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     SMB_G2890 (yrrC)
DNA repair and recombination proteins [BR:cae03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     SMB_G2890 (yrrC)
SSDB
Motif
Pfam: HHH_4 AAA_19 AAA_30 SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 Helicase_RecD PhoH PIF1 AAA_23 SLFN-g3_helicase AAA_22 nSTAND3 UvrD_C UvrD-helicase DNA_pol_lambd_f AAA HHH_2 AAA_28 DEAD SMC_N HerA_C DUF575 AAA_16 ABC_tran AAA_29 NTPase_1
Other DBs
NCBI-ProteinID: AEI34320
Position
complement(2988739..2990958)
AA seq 739 aa
MVELRCVIEAVVFKNEENGYVVANANAEGKDKITIVGCIPYIMEGQSLKISGEWIVHPQF
GKQFKIERCEEILPNSLLGIEKYLASGIISGIGPVTAKKIVNKFGEKTLEILDNDIYRLS
EIEGIGKKKIDKIYEAYSEQREVRNIMIFLQNYGVTPKQCVKIYNHYKSKAIEVVKQNPY
ILVEEISGIGFKTADKIARSLGIQGNSPFRIESGVCYVINEFCALGNTYMPIDKLVKNCI
NVLNVKKEEVEKAIYECTLSQKIKVEIINGENCVFTMEYYYCEIGITRKIITLAYDSYKS
LEIDVDQKIIQFENENKIKFAPSQVEAIEGAFSNGIEVITGGPGTGKTTIIRCITYIFEE
LNMKVFMAAPTGRAAKRMSESTGREAKTIHRMLELGYEDEVFFDNNNYSTLQCDVVIIDE
ASMIDVVLMNSLLKSIGMGTRVIIVGDVDQLPSVGPGNVLRDIIESKCVKVIRLNNIFRQ
AKESMITVNAHKINSGEMPLLNKKDKDFYFIREDNAEAITNTIISLVYKRLPLFNKSWKA
ARDIQVLAPMKKGIAGVANLNVSLQSIINPPHKSKDEIKFRDNIFRVGDKVMQIKNNYML
KWNRINGDGEKTGEGVFNGDIGFISNIDEDNNVIVIFDDEKEVTYERINLDELELAYAIT
IHKSQGSEFPVVVLPMTMGPPLLMNRNLLYTGITRAKQLVVIVGFPKAIKFMIDNDKSFE
RYSGLKWRIEDIIKEESEE
NT seq 2220 nt   +upstreamnt  +downstreamnt
atggtagaacttcgttgtgttattgaagctgttgtgttcaaaaatgaagaaaatgggtat
gttgttgcaaacgcaaatgcagaaggaaaagataaaattacaattgttggatgcataccg
tatattatggaaggccaatctttaaagatttcaggagaatggattgttcatccacagttt
ggaaagcaatttaaaattgaacgctgcgaagaaatactacctaattctttattaggtata
gaaaaatatttggcatcaggaattatatcgggaataggtcctgtaacagcaaaaaagata
gttaataaatttggagaaaaaactcttgagatattagataatgatatatatagattaagt
gaaatagagggaataggtaaaaagaaaatagataaaatatatgaggcgtattcagaacaa
agagaagtaagaaatattatgatttttcttcagaattatggcgttacgcctaaacaatgt
gtgaaaatatataatcactataaatctaaggctatagaggttgtgaaacaaaacccatat
attcttgtagaagagatatcaggaataggttttaagacggcagataaaatagctcgtagt
cttggaatacaaggaaactctccatttagaattgaaagtggagtatgttatgtaataaat
gaattttgtgctttaggtaatacatatatgcctatagataaacttgtaaagaactgtatt
aatgtattaaatgtaaaaaaagaagaggttgaaaaagcaatatatgaatgtactctttct
caaaagataaaggttgaaataataaatggggaaaattgtgtttttacaatggaatattac
tattgtgagataggaataacaagaaagataataactcttgcctatgatagttataaaagc
ttagagatagatgtagaccaaaagataatacagtttgaaaatgaaaataaaataaaattt
gcaccatcacaagtagaagctattgaaggagcgttttcaaatggtatagaagtaataaca
ggagggcctggtacaggtaagacaacaataataagatgcataacatatatatttgaagaa
ttaaatatgaaggtatttatggcagcacctacaggaagagctgcaaaaagaatgtccgaa
tcaacaggtagggaggccaagaccatacatagaatgctggagcttggatatgaagatgag
gtgttttttgataataataactatagtacacttcaatgtgatgttgtaataatagacgag
gcatcaatgatagatgttgttttaatgaacagtctattgaagtcaataggtatgggtact
agggttattatagttggtgatgtagaccagcttccttctgtgggacctggaaatgtgctg
agagatataattgaaagtaaatgtgtaaaggtcattagattgaataatatttttaggcaa
gcaaaggaaagtatgattacagtgaatgcgcataaaatcaatagtggtgaaatgcccctt
ctaaataaaaaggataaggatttttattttatacgagaagataatgcagaagctataacc
aatactataattagtttggtttacaagagactgccactttttaataagtcttggaaggct
gctagggatatacaagtgttagcacctatgaaaaaggggatagcaggtgttgcaaactta
aatgtaagtcttcaaagcattattaatcctcctcataaaagtaaagatgaaataaaattt
agagataatatatttagagttggcgacaaggttatgcaaataaaaaacaattatatgtta
aaatggaatagaataaatggagatggcgaaaagacaggagaaggagtttttaatggagat
atagggtttataagtaatatagatgaggataataatgtgatagttatttttgatgatgaa
aaagaggttacatatgaaagaattaacttagatgaacttgaacttgcatatgcaataact
atccataaaagccagggaagtgaattcccagtagtggttcttcctatgactatggggcca
cctcttctgatgaataggaaccttctttatacaggaattacaagagcaaagcagctagtt
gtaatagttgggtttccaaaagcaataaaatttatgatagataacgataaaagttttgaa
agatattcaggtctcaaatggagaatcgaagatataataaaagaagagagtgaggagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (29)   
   Pfam (29)   
All databases (38)   

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