KEGG T04738: AL524

Citrobacter amalonaticus FDAARGOS_165: AL524_21005

Entry

AL524_21005       CDS       T04738

Name

(GenBank) exonuclease subunit SbcC

K03546

DNA repair protein SbcC/Rad50

Organism

caf Citrobacter amalonaticus FDAARGOS_165

Brite

KEGG Orthology (KO) [BR:caf00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:caf03400]
    AL524_21005
DNA repair and recombination proteins [BR:caf03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AL524_21005
    Archaeal homologous recombinant proteins
     AL524_21005

SSDB

Motif

Pfam:

AAA_23 SbcC_Walker_B SMC_N AAA_29 T2SSE nSTAND3 ABC_tran AAA_21 cobW NTPase_1 AAA_15 AAA_22 AAA_14

Other DBs

NCBI-ProteinID:

AMG55362

Position

4356557..4359700

AA seq 1047 aa
MKILSLRLKNLNSLKGEWKVDFTVEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LNTVSQSQNDLMSRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCA
DGKILADKVKDKLEMTAELTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE
IYGQISAQVFEQHKTARTELEKLQAQANGVALLAPEALQTLTESLQALTDEEKQLVAQQQ
TGQQQLNWLTRQHELQTDANQRQQMLQVAQEALENAQPQLATLSLAQPARALRPLWERIQ
EQSATVSRTRQQINEVNTRLQSRFTLRNHIRRQAEQQSTALLATQQTLSEWLNEHDRFRL
WNNESGGWRALFAQQASDNVQLAKWQQQQVNDSRKLESLPPVTLNLTAEEVAAALVQHAQ
QRPLRQQLLSLHGQIVPRLTRLSQLQATITHNKQELARLNTLLEAKRQQYKDKYQQYQDV
KTLCEQEARIKDLESQRAQLQSGQPCPLCGSTTHPAVAAYQALEPGVNQARRDALEKEVK
MLADEGATLRGQSEAVNQQLQRDESEAQTLAKDEQALTQQWQTTIAALNLTLQPQDDIQP
WLTAQDEHEQQLYQLSQRHDLQAQITAHAQQVAQFRQQIDQRQATLAAQLSRYTLSLPEE
GSEEAWLDARAAEAQTWQQRQTELTAIQARIAQLTPLLETLPAVDTHAEDDASVTLENWR
QVHDECVSLRSQLQTLQQQEKQETQRAADAQAQFDAALSHSLFADQAAFLAALLDDEAVT
RLEQLKQSLENQVQQAQTLATQSAQALAAHQQQPPAGLDPTLSIEHVQQTVAQLNDRVRD
NATRQGEIRQQLKQDSDNRQQQQTLMQKIDNAMQQVEDWGYLNALIGSKEGDKFRKFAQG
LTLDNLVWLANNQLTRLHGRYLLQRKASEALELEVVDTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK
ERIPVQIKVKKINGLGYSKLDRMFAVE

NT seq 3144 nt +upstreamnt +downstreamnt
atgaagattctcagtctgcgcctgaaaaacctcaattcgctgaaaggggaatggaaggtc
gatttcacggtggagccctttgccagcaatggcctgtttgccattaccgggcctacgggg
gcgggtaaaaccactctgctcgacgcgatttgcctggcgctgtaccacgagacgccacgc
ctgaataccgtgtcgcaatcgcagaacgatctgatgtcccgcgatacggcggaatgtctg
gcggaagtggagtttgaagtcaaaggcgaagcgtatcgtgcgttctggagccagaaccgg
gcgcgcaaccagcccgacggtaatttacaggttccgcgcgttgaactggcgcgctgtgcc
gacgggaaaatccttgccgacaaagtgaaagacaaactggagatgacggcggaactgacc
ggtctggattatggtcgatttacccgttcgatgctgctctcgcaggggcagttcgccgcc
ttcctcaacgcgaagccgaaagagcgtgcggaactgctggaagagctgaccggcacggaa
atttacggccagatctctgcccaggtgtttgaacagcacaaaaccgcacgcaccgaactg
gaaaaattacaggcgcaagccaacggcgtcgcgctgttagcccccgaggcgttgcagacg
ctgacagaaagtttgcaggcactcactgacgaagaaaaacagctggtcgcccagcagcag
actggacagcagcagttgaactggctgacgcgacagcacgaactgcagaccgacgcgaac
cagcgtcagcagatgctgcaggttgcccaggaagcgctggaaaacgcccagccacagctg
gcaacgctcagcctcgcacagcctgccagagcgttgcgaccattgtgggagcgcattcag
gaacaatccgctaccgtctcccgcactcgccagcagattaacgaagtaaatactcgctta
cagagtagattcacgcttcgcaaccacatccgacgccaggcagagcaacagtccaccgcc
ctgctcgctacgcaacagacgctgagcgagtggctaaacgaacacgatcgctttcgccta
tggaacaacgagtcaggaggatggcgcgccctttttgctcagcaggccagcgataacgtt
cagctggcaaaatggcagcaacagcaggtcaacgatagccgcaagctggaatcgctgccg
ccagtgacgctcaatctgacggcagaggaagtcgcagcggcgctggtgcaacatgcgcaa
cagcgtcctctgcgccagcaactgctttcgctccatggtcagattgttccccgactgacg
cgtttgagtcagcttcaggcgacgataacgcataacaaacaggaactggcccgactcaat
accctgctggaggcaaagcgccagcagtataaagataaatatcagcagtatcaggatgtt
aaaacactctgtgagcaagaggcgcggatcaaagatctggaaagccagcgtgcgcagttg
cagtccggccagccctgcccgctttgcggttccaccacccatcctgctgtcgcggcatat
caggcactcgaacctggtgttaatcaggcgcgacgcgatgcgctggaaaaagaagtcaaa
atgctggccgacgaaggcgccaccctgcgtggacagtccgaggcagtcaaccagcagcta
cagcgtgacgaaagcgaagcgcagacgctggctaaagatgagcaagcgctcactcaacag
tggcaaacaacgatcgccgcactgaacctcacgttacagccgcaggatgatattcagccc
tggctgacggcgcaggacgaacacgagcagcaactctaccagttgagccagcgccatgac
ctacaggcgcaaattaccgcccatgcacagcaggtggcgcagttccgccagcaaatcgac
cagcgccaggcgacgctggcagcacagttaagccgctatacgttgtcacttcctgaggaa
ggcagcgaggaggcatggttagatgcgcgcgcggcagaggcacaaacatggcaacagcgg
cagacggagttgacggcgatacaggcgcgtatcgcgcagctcaccccgctactcgagacg
ctgcccgccgtcgatacccacgcagaagatgatgcaagcgtgacgctggaaaactggcgt
caggttcatgacgagtgcgtgtcgctgcgcagtcaattgcagacattacagcagcaggag
aaacaggaaactcagcgcgctgccgatgcgcaggcgcagttcgatgccgcgctgtcgcac
agtttgtttgccgatcaggcagcatttcttgccgcgctgctggatgacgaggcggtcacg
cgtctggaacagctaaaacagtcgctggaaaaccaggttcagcaggcacagacgctcgcc
acacaatcggcgcaggcgctggcggcacatcagcaacaaccgccagcgggtctggatccc
acgctgtcgattgagcatgttcagcaaaccgtggcgcagcttaacgatcgggtacgcgat
aacgctacgcgtcagggcgaaatacgccaacagctaaaacaggacagcgacaatcgccag
cagcagcagacgttgatgcaaaaaatcgacaacgcgatgcaacaggttgaggactggggc
tacctgaatgcgctaatcggctctaaagagggggataaattccgcaaattcgcccagggg
ctgacgctggataacctggtctggctggcgaacaaccagttgacccgcctgcatggtcgc
tatttactgcaacgtaaggccagtgaagcgctggaactggaggtggtcgatacctggcag
gccgacgccgtacgcgatacccgtaccctttccggtggcgaaagtttcctggtcagtctc
gcgctggcgctggcgctctccgatctggtcagccacaaaacgcgcattgactcgctgttc
cttgatgaaggcttcggcacgctcgacagtgaaacgctggataccgcccttgatgcgctg
gatgcgctcaacgccagcggcaaaaccattggcgtgattagccatgtagaagcgatgaaa
gaacggattccggtgcagatcaaggtgaagaaaatcaacggactaggctacagcaaactc
gacaggatgtttgccgtagaataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (19)   

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