KEGG   Candida albicans: CAALFM_C703400CA
Entry
CAALFM_C703400CA  CDS       T00189                                 
Symbol
CaO19.1335
Name
(RefSeq) ATP-dependent RNA helicase
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
cal  Candida albicans
Pathway
cal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CAALFM_C703400CA (CaO19.1335)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cal03019]
    CAALFM_C703400CA (CaO19.1335)
   03041 Spliceosome [BR:cal03041]
    CAALFM_C703400CA (CaO19.1335)
   03009 Ribosome biogenesis [BR:cal03009]
    CAALFM_C703400CA (CaO19.1335)
   03016 Transfer RNA biogenesis [BR:cal03016]
    CAALFM_C703400CA (CaO19.1335)
Enzymes [BR:cal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CAALFM_C703400CA (CaO19.1335)
Messenger RNA biogenesis [BR:cal03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     CAALFM_C703400CA (CaO19.1335)
Spliceosome [BR:cal03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    CAALFM_C703400CA (CaO19.1335)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    CAALFM_C703400CA (CaO19.1335)
Ribosome biogenesis [BR:cal03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    CAALFM_C703400CA (CaO19.1335)
Transfer RNA biogenesis [BR:cal03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    CAALFM_C703400CA (CaO19.1335)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 3646717
NCBI-ProteinID: XP_711675
UniProt: A0A1D8PRD5
Position
7:complement(745808..748996)
AA seq 1062 aa
MDDLFDVFDEAPQAAPPKIEEIKDEVKPETTDNQTRSTKKRQFDNNNKTTTNSNNSSSSN
NKKHKQAEDIKPVVFDSVEIETSREVKPSEGLSNSATVDADNKLKLKHQIRHQVAIPPSY
PYVPIGEHKRKHEARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSL
RDKQRVIYTSPIKALSNQKFRELQAIFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRG
SEVMREVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKI
HNQPCHVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPA
SSDSGRGNKKGKTNKGRNHQDGKGDIYKIVKMIYMKKYNPVIVFSFSKRDCESLALKMSK
LDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGIGIHHSGLLPILKEIIE
ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSGRAGRRG
LDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHS
FFQFQKASSVPILEGKLAQCKQEFADITIEDEPIIKDYYDLKQQLLKYNEDVRKVITHPG
NILPFLQDGRVIKVKIGDLDYGWGMVTTFTKRNRRHQEEFAPHDAYVVEVFITTMFIDSP
VNLIKKFNPMLPEGIRPAKSGEQTRAEFISITLSSIEKISTVRLRVPDDYKSSTAKRTLV
KTLKDLPKRLPDGIPLIDPVQSMKITDDDFKKLLQKIDILDSKIVSNPLNNSARLDDLYA
KYTAKVDLNNQIKKLEEQIFQAKSIIQLDQLSNMKRVLKKLEFTGSEEVVELKGRVAAEL
STGDELMITELLFSGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAKVIHETAN
KIAKISKQSGLEIVEKDYIEQFNLALVEVVFVWSNGASFSSICKMTDIYEGSIIRALRRE
IELIKQLVDASKIIGNQELVDKFEKCIELINRDFVQVSSLYM
NT seq 3189 nt   +upstreamnt  +downstreamnt
atggatgacttgtttgatgtctttgatgaagctcctcaagcagctccacctaaaatagaa
gaaatcaaagatgaagtgaaaccagaaaccacagataatcaaactcgctctacgaagaaa
cgtcagttcgacaacaacaacaaaacaactaccaacagcaacaacagtagtagtagtaat
aacaaaaaacataaacaagctgaagatattaaaccagttgtttttgattcagttgaaatt
gaaacatctagagaagtcaaaccaagtgaaggattgagtaattctgccacggttgacgca
gataataaattgaaattaaaacatcaaattagacatcaagtagccatcccaccatcatat
ccttatgtaccaattggtgaacataaacgtaaacatgaagctagaacttatccattcaca
ttagatccgttccaagacaccgctatttcatgtatagatagaaatgaaagtgttttagtc
tcagctcatacttctgctggtaaaaccgtggtggcagaatacgctattgcccaatccttg
agagataaacaaagagttatttatacttcccctattaaagctttatcaaatcaaaaattc
cgtgaattacaagcaatttttggtgatgttgggttaatgactggtgatgtcaccattaat
cctgatgctgggtgtttagtcatgactacagaaattttaagaagtatgctttatagaggg
tcagaagtgatgcgtgaagttgcttgggtagtgtttgatgaagtccattatatgagagat
aagtctcgtggggttgtttgggaagaaacgattattttattacccgataaggttcattat
gtatttttatcagctacaatccctaatgctatggaatttgctgaatggattgtgaaaatt
cacaatcaaccatgtcatgttgtttacactgattttagaccaactcctttacaacattat
ttgttccctgctggtggtgatggtatccatttagttgttgatgaaaaagggacattcaga
gaagaaaattttcaaaaggcaatggcaactatcagtgataatagtggcgacgaccctgct
tcaagtgatagtggtagaggtaataaaaagggtaaaaccaataaaggtcgtaatcatcaa
gatggtaaaggtgatatctataaaattgtgaaaatgatttatatgaaaaagtataatccg
gttattgtattttcattttctaaacgtgattgtgaatctttagctttaaaaatgtcaaaa
ttagatttcaatactgatgaagaacgtaattcattgacacaaatcttttataatgccatt
gaattgctacctgaagctgatcgtgaattacctcaaattaaaaacattctaccattattg
aaaagaggtattggtatccatcattcagggttattaccaattttgaaagaaattattgaa
attttattccaagaaggatttttaaaagtattatttgccactgaaactttttctattgga
ttaaatatgccggctaaaaccgttgtttttacatccgtgcgtaaatgggatggtgttggt
tttagatgggtttctggtggtgaatatatccaaatgtctggacgtgccggtagacgtggg
ttggatgatcgtggtattgttataatgatgatcgatgagaaaatggaaccacaagtagct
aaaggtatggtaaagggtcaagctgatagattagattctgcattccatttaggatacaat
atgattcttaatttaatgagagtggaaggtatttccccggaattcatgttggaacattca
tttttccaattccaaaaggcatctagtgttcctattttagaggggaaattagctcaatgt
aaacaagaatttgctgatattaccattgaagatgaaccaattataaaggactattatgat
ttgaaacaacaattgttaaaatataatgaagatgtacgtaaagttattactcacccaggt
aatattttaccatttttacaagatggtagagttattaaagttaaaattggtgatcttgat
tatggatggggtatggttaccacatttacgaaaaggaaccgtagacaccaagaagaattt
gctccacatgatgcatacgttgttgaagtatttataacaaccatgtttattgattcacca
gtcaatttaattaaaaaatttaaccctatgttgcctgaaggtattcgaccagctaaatca
ggggaacaaaccagagctgaatttatttctatcaccttaagctcaattgagaagattagt
actgttagattaagagttcctgatgattataagagttcgactgccaagagaacattggtt
aaaactttgaaagatttaccgaaaagattacccgatggaatcccattaattgatccagta
caaagtatgaaaatcactgatgatgatttcaaaaaacttctacaaaaaattgatatttta
gattctaaaatagtttctaatccattgaataatagcgctagattggatgatttatatgcc
aaatacactgcaaaagttgatttaaacaatcaaatcaaaaaattagaggaacaaatattc
caagccaaatcaatcattcaattagatcaattatcgaatatgaaacgagttttgaaaaaa
ttagaattcactggttcagaagaagttgttgaattgaaaggtagagtagctgctgaatta
tctactggtgatgaattaatgattactgagttattattctccgggtttttcaatgagtta
actccacagcaaatttgtggattattgtcagcatttattttccaagaacgagctaaagaa
ttacctaaattaaaaccagaacttgctgaaccagcaaaagtaattcatgaaaccgctaat
aaaattgctaaaatttcaaaacaaagtggattagaaattgttgaaaaagattatattgaa
caattcaatcttgccttagttgaagttgtatttgtatggtctaatggtgcttcattcagt
tcaatttgtaaaatgactgatatttatgaaggtagtataattcgtgccttaagaagagaa
atcgaattgattaaacaattggtagatgcatcaaaaatcattggtaatcaagaattggtt
gataaatttgaaaaatgtattgaattgatcaatagagattttgtacaagtatcttcattg
tatatgtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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