KEGG   Capsicum annuum (peppers): 107843981
Entry
107843981         CDS       T04646                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107843981
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cann03019]
    107843981
Enzymes [BR:cann01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     107843981
Messenger RNA biogenesis [BR:cann03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107843981
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     107843981
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2
Other DBs
NCBI-GeneID: 107843981
NCBI-ProteinID: XP_016543917
Position
10:complement(220416752..220428827)
AA seq 605 aa
MLSVLRVHLPSDIPIVGCELTPYVLLRRPNKDKSVITEDVNEAAPVDGYFLRYKWYRIQS
DKKVAICSIHPSEQATLQCLGCVKAKIPVSKSYHCSPKCFSDAWQHHRVLHERAASAVNE
NGNEEEEIFGRFNSSGSGVINTSLVSSQSSGSLANGTTPLYPAAVTQRNGGETWFEVGRA
KTYTPTADDIGHVLKFECVVVDAETKLPVGPSSTILTSRVIPAPCPTPRRMFSVSGVDIP
GHLDLDGRLSSSGTFTVLSYNILSDAYATNELYSYCPSWALSWAYRRQNLLREIVGYRAD
IVCLQEVQSNHFEEFFAPELDKHGYQALFKKKTAEVFSGSINNIDGCATFFRRDRFSHVK
KYEVEFNKAAQSLTDAVVPIAQKKTALNRLVKDNVALIVVLEAKFSNQGVDNPGKRQLVC
VANTHVNVQQELRDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHTLLALGK
VDPMHPDLGVDPLGILRPPTKLTHQLPLVSAYSSFARMGVGLALEQQRRRMDPNTNEPLF
TNCTRDFIGTHDYIFYSADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK
PRTRR
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgctgagtgtgttaagggtacatttaccatccgatataccaattgttggatgtgaactt
acgccttatgtgcttttacgacggccgaataaggataaatcggttattactgaagatgtt
aatgaagcggctccagttgatggatattttctgagatacaaatggtaccgtatacaaagt
gataaaaaagttgctatctgtagtatccatccatctgagcaagccacattacagtgcctt
gggtgtgtgaaggccaaaatccctgtctctaagagttaccattgctcacctaaatgcttc
tcagatgcctggcaacatcatcgtgttctgcatgaacgtgctgctagtgctgtgaatgaa
aatggaaacgaggaggaagaaatatttgggcgatttaatagttctggctctggtgttatt
aatacaagtttggtttcttctcaatcaagtggcagcttggcgaatggaaccacaccttta
tatcctgcagcagtaacccagagaaatggcggtgaaacctggtttgaagttggacgggct
aaaacatatacgccaactgcagatgatattggccacgtgcttaaatttgaatgtgttgtt
gtagatgcagaaaccaaattacctgttgggccttctagtaccatattgacatcccgggtg
attcctgctccatgtccaactcctcgtcgcatgttttcagttagcggagttgatattccg
ggacatctggatttggatggtcgattatcatcttcaggaactttcactgtgctttcctac
aatattctgtctgatgcgtatgcaacaaatgaattatacagttattgcccctcttgggct
ctttcttgggcatatcgcagacagaatctattgcgtgaaattgttggctaccgtgcagac
attgtttgtctacaagaggttcaaagtaatcattttgaggaattctttgctcctgagttg
gataaacacggttaccaagctctgtttaaaaagaaaacagctgaggtgtttagtgggagt
attaacaatattgatggttgtgctacttttttccgccgagatagattctcacatgttaaa
aaatatgaggtcgagttcaataaagctgcacaatctttgactgatgctgtggttcctatt
gcccaaaagaagaccgcattaaatcgtttggttaaggataatgttgcacttatagtggtt
ttggaagcaaagttcagcaaccagggggttgacaaccctggaaagcgtcaacttgtttgt
gtggccaacacacatgtgaatgttcagcaagaattaagggatgtcaaactgtggcaggtt
cacacacttcttaaaggacttgaaaaaatcgctgccagtgctgacatcccaatgctggtc
tgtggggattttaattcggtgcccggaagtgctcctcatacacttcttgctttgggtaaa
gtagatccaatgcatccagatcttggagtggatcctcttggtattttgcgtccacctaca
aaattaacacaccagctgccattggttagcgcttattcatcctttgccagaatgggggtg
ggacttgcactagagcagcaaaggaggaggatggatcctaataccaatgagcccttgttt
accaactgcaccagagattttattggcactcatgattatatattctactcagctgattca
ttaactgttgaatctttattggagctcttggatgaagaaagcttgagaaaagacacagct
cttccttctccagagtggtcctctgatcatatagcactcttagctgagtttcgctgcaag
cccagaactagacgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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