KEGG   Capsicum annuum (peppers): 107850411
Entry
107850411         CDS       T04646                                 
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
  KO
K03138  transcription initiation factor TFIIF subunit alpha
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107850411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cann03021]
    107850411
Transcription machinery [BR:cann03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIF
     107850411
SSDB
Motif
Pfam: TFIIF_alpha zf-C3HC4_3 DZR_2 DZR zinc_ribbon_2 zf-ribbon_3
Other DBs
NCBI-GeneID: 107850411
NCBI-ProteinID: XP_016550393
Position
12:1659346..1668920
AA seq 543 aa
MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETREKCYECGTPVTRLIREYN
VRACSSNDKNHFIARFASGLPKFSKKKSDSKWTLQKEGLQGRQVTDSLREKFKNKPWLLE
DETGQFQYHGHLEGAQSAHYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKASGDEDEGNASDHAD
EDEDEESARRNRLGLNKKDDDDEEGLRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGND
PEEREDLAPEIPAPPEIKQTQDEDDEDEGEEEGGGGLSKSGKELKKLLGKANGLDESDAE
DDDDDDDTEEDISPVLAPKPKEAPKEEPVDTNSPLKPAASGSNRGTPSSKSSKTKRKATG
DESKPTNGAPLKKVKTETDAKPGKDDTPSTSKNSTPTAITKGASSSSRPAPTSATGPVTE
DEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFADVLRKISKIQKTSSGSSYVVLRER
TNQ
NT seq 1632 nt   +upstreamnt  +downstreamnt
atgtcgattgatttgatattgaaaccgtcgtgtagcaggtgtggttcgtcgtcggatttg
tatggaagctcatgcaagcacttgactctttgtttgtcttgtggtaaaaatatggctgag
actcgtgagaagtgttacgagtgtggtactccagttacgcgattgattcgagagtataat
gttcgggcctgctccagcaatgataagaatcatttcattgctaggtttgcttcaggctta
cctaaattttcaaaaaagaagagcgatagtaaatggactttgcaaaaagaaggtttgcaa
ggacgtcaagttacagatagtttgcgggaaaagttcaagaataaaccatggctattagag
gatgaaactggtcaatttcagtatcatggtcaccttgagggagcacagtcagcacattat
tatctactgatgatgcagggtgaagagttatttgctattcctgctggttcttggtataac
ttcaacaaagtagcccaatataagcaacttactctggaggaagcagaagagaaaatgaaa
aatagaagaaaaactgcagatgggtaccagagatggatgatgaaagcagcaaataatgga
cctgctgccttcggtgaagtagaaaggtttgatgataaagaaggtggatctggtgggaca
agggggcgtaagaaagcgtctggtgatgaggatgaaggcaatgcgtccgaccatgcggat
gaagatgaggacgaggagtctgctaggagaaacaggttgggactcaacaaaaaagacgat
gatgatgaagagggtcttagagggggtgatcttgacctggatgatgatgatattgaaaaa
ggggatgactgggagcatgaggagatttttacggatgatgatgaagctgttgggaatgat
cctgaggaaagggaagatttggctcctgaaattcctgctcctccagagattaagcagacc
caggatgaagatgacgaggatgaaggtgaagaagagggaggagggggtttgagcaaatct
ggaaaagagttgaaaaagttgcttggaaaagccaatggattggatgaatcagatgctgag
gatgacgatgatgatgatgatacagaagaggatatttcacctgtattagctcctaagcct
aaggaagctcctaaagaagaaccggttgataccaacagtcctttgaaaccagctgcttct
ggatccaaccgtggaactccatcttcaaagtcatctaagactaaaagaaaagctactgga
gatgagtcaaaaccaactaatggtgctcccttgaaaaaagtgaaaacagagacggatgcc
aaacctgggaaagatgatactccatctacttcaaagaacagtactccgactgctatcaca
aagggtgcatcatcctcttccagacctgctccgacttctgccacaggtcctgttactgaa
gatgaaattagagctgttctgttgcagagaaaaccagtgaccacacaggatcttgtcagc
caatttaaatctcgtttgaaatgcaaagaggataagactgcttttgctgatgtattgagg
aagatctccaagatacagaagacttcttcaggaagtagctatgtcgtgttacgagagagg
acaaatcaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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