KEGG   Capsicum annuum (peppers): 13540196
Entry
13540196          CDS       T04646                                 
Symbol
rpoB, C329_p076
Name
(RefSeq) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    13540196 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cann03021]
    13540196 (rpoB)
   03400 DNA repair and recombination proteins [BR:cann03400]
    13540196 (rpoB)
Enzymes [BR:cann01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     13540196 (rpoB)
Transcription machinery [BR:cann03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     13540196 (rpoB)
DNA repair and recombination proteins [BR:cann03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      13540196 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-GeneID: 13540196
NCBI-ProteinID: YP_006666022
UniProt: J7H6R6
Position
Pltd:complement(24246..27458)
AA seq 1070 aa
MLWDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTDQEIEFQLFVETYQLV
EPLIKERDAVYESLTYSSELYVSAGLIWKNSRDMQEQTIFIGNIPLMNSLGTSIVNGIYR
IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISI
LVLSSAMGLNLREILENVCYPEIFLSFLSNKERKKIGSKENAILEFYQQFACVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNMNRRLNLDIPQNNTFLLPRDILAAADHLIGLKFGM
GALDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLYLSPGRDEYYMVA
AGNSLALNQDIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQAALDSGALAIAEREGRVVYTNTDTILLAGN
GDILSIPLVIYQRSNKNTCMHQKPQVPRGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPEKVTNEIPHLEAHLLRNL
DKNGIVMLGSWVETGDILVGKLTPQVVKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIQKRGGSSYNPETIHVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMP
YLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLV
FSELYEASKQTSNPWVFEPEYPGKSRIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
NT seq 3213 nt   +upstreamnt  +downstreamnt
atgctctgggatggaaatgagggaatatctacaatacctggatttaatcagatacaattt
gaaggattttgtaggttcattgatcaaggtttgacggaagaactttataagtttccaaaa
attgaagatacagatcaagaaattgaatttcaattatttgtggaaacatatcaattggtc
gaacccttgataaaggaaagagatgctgtgtatgaatcactcacatattcttctgaatta
tatgtatccgcgggattaatttggaaaaacagtagggatatgcaagaacaaacaattttt
atcggaaacattcctctaatgaattccctgggaacttctatagtcaatggaatatataga
attgtgatcaatcaaatattgcaaagtcccggtatttattaccgatcagaattggaccat
aacggaatttcggtctataccggcaccataatatcagattggggaggaagatcagaatta
gaaattgatagaaaagcaaggatatgggctcgtgtaagtaggaaacaaaaaatatctatt
ctagttctatcatcagctatgggtttgaatctaagagaaattctagagaatgtttgctat
cctgaaatttttttgtcttttctgagtaataaggagagaaaaaaaattgggtcaaaagaa
aatgccattttggagttttatcaacaatttgcttgtgtaggtggcgatccggtattttct
gaatccttatgtaaggaattacaaaagaaattctttcaacaaagatgtgaattaggaagg
attggtcgacgaaatatgaaccgaagactgaaccttgatataccccagaacaatacattt
ttgttaccacgagatatattggcagccgccgatcatttgattgggctgaaatttggaatg
ggtgcacttgacgatatgaatcatttgaaaaataaacgtattcgttctgtagcagatctt
ttacaagatcaattcggattggctctggttcgtttagaaaatgtggttcgggggactata
tgtggagcaattcggcataaattgataccgacacctcagaatttggtaacctcaactcca
ttaacaactacttatgaatcctttttcggtttacacccattatctcaagttttggatcga
actaatccattaacacaaatagttcatgggagaaaattaagttatttgggccctggagga
ctgacaggtcgcactgctagttttcggatacgagatatccatcctagtcactatggacgt
atttgcccaattgacacatctgaaggaatcaatgttggacttattggatccttagcaatt
catgcgaggattggtcattggggatctctagaaagccctttttatgaaatttctgagagg
tcaaccggggtacggatgctttatttatcaccaggtagagatgaatactatatggtagcg
gcaggaaattctttagccttaaatcaggatattcaggaagaacaggttgttccagctcga
taccgtcaagaattcttgactattgcatgggaacaggttcatcttcgaagtatttttcct
tttcaatatttttctattggagcttccctcattccttttatcgaacataatgatgcgaat
cgagctttaatgagttctaatatgcaacgtcaagcagttcctctttctcgctccgagaaa
tgcattgttggaactgggttggaacgacaagcagctctagattcgggggctcttgctata
gccgaacgcgagggaagggtcgtttataccaatactgacacgattcttttagcgggtaat
ggagatattctaagcattccattagttatatatcaacgttccaataaaaatacttgtatg
catcaaaaaccccaggttcctcggggtaaatgcattaaaaagggacaaattttagcggat
ggtgctgctacggttggtggcgaacttgctttggggaaaaacgtattagtagcttatatg
ccgtgggagggttacaattctgaagatgcagtacttattagcgagcgtttggtatatgaa
gatatttatacttcttttcacatacggaaatatgaaattcagactcatgtgacaagtcaa
ggccctgaaaaagtaactaatgaaataccgcatttagaagcccatttactccgcaattta
gacaaaaatggaattgtgatgctgggatcttgggtagagacgggtgatattttagtaggt
aaattaacaccccaggtcgtgaaagaatcgtcgtatgccccggaagatagattgttacga
gctatacttggtattcaggtatctacttcaaaagaaacttgtctaaaattacctataggt
ggcagggggcgggttattgatgtgaggtggatccagaaaaggggtggttctagttataat
cccgaaacgattcatgtatatatttcacagaaacgtgaaatcaaagtaggcgataaagta
gccggaagacacggaaataagggtatcatttcaaaaattttgcctagacaagatatgcct
tatttacaagatggaagatccgttgatatggtctttaacccattaggagtaccttcacga
atgaatgtaggacagatatttgaatgttcactagggttagcagggagtctgctagacaga
cattatagaatagcaccttttgatgagagatatgaacaagaagcttcgcgaaaactagtg
ttttctgaattatatgaagccagtaagcaaacatcgaatccatgggtatttgaacccgaa
tatccaggaaaaagcagaatatttgatggaaggacggggaatccttttgaacaacccgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatccatggg
cgttccagtggacattatgcgcttgttacacaacaaccccttagaggaagagccaaacag
gggggacagcgggtaggagaaatggaggtttgggctctagaagggtttggggttgctcat
attttacaagagatgcttacttataaatcggatcatattagagctcgccaggaagtactt
ggtactacgatcattgggggaacaataccgaatcccgaagatgctccagaatcttttcga
ttgctcgttcgagaactacgatctttagctctggagctgaatcatttccttgtatctgag
aagaacttccagattaataggaaggaagcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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