KEGG   Capnocytophaga sp. FDAARGOS_737: FOC45_01775
Entry
FOC45_01775       CDS       T06329                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
capf  Capnocytophaga sp. FDAARGOS_737
Pathway
capf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:capf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FOC45_01775
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:capf03019]
    FOC45_01775
   03009 Ribosome biogenesis [BR:capf03009]
    FOC45_01775
Messenger RNA biogenesis [BR:capf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FOC45_01775
Ribosome biogenesis [BR:capf03009]
 Prokaryotic type
  rRNA helicases
   FOC45_01775
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII ParBc RecG_N CoA_binding_2
Other DBs
NCBI-ProteinID: QGS17055
UniProt: A0A6B8TAP7
Position
399698..401446
AA seq 582 aa
MNLFEQLGLDEPILRAITDMGFETPSEIQQKAIPTLLEDDTDMVALAQTGTGKTAAFGFP
LLQLIDTDSKLTQGLILSPTRELCLQIASELKNYAKYLPKVNVVAVYGGASIEEQARSLK
KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPKEKST
WLFSATMPNEVARIARQFMRKPIEITVGTRNQASSTVQHEYYVVNGRHRYQALKRLADAN
PDIFSVVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVLVPKSELRKIKEIEKI
IKQPFEQKALPTGIEICEIQLYHLANSLKNVEVNPAIEDYLPAIYKELQHIDREELIKKI
FAVEFTRFFNYYKNAEVLPEEDAKESRKGGDSGEVRYFINIGERDGYDWKTLKDFLKATL
NLGRDDVFKVDVKNSFSFFNTEADQADLVMSTFADFRMDGRFINVEISDKGAGRSRGDKK
GGESRRKGEDKKKGEKKGEKKSRKQKTVEAFEQAFKKKKKRK
NT seq 1749 nt   +upstreamnt  +downstreamnt
atgaatttatttgaacaattaggtcttgatgaacctatcctcagagccataactgatatg
ggctttgaaactccttctgaaatccaacaaaaagccattcctaccctcttagaagatgat
accgatatggtagctttagctcaaacaggtactggtaaaacagctgcctttggcttccct
cttctgcagcttatcgacactgatagcaagcttacacaagggcttatcctttcgcctacg
cgcgaactttgtttgcaaattgcttcagaattgaaaaattacgctaaatatttgcctaag
gtgaatgtggtagcggtatacggtggtgcgagtatagaagaacaagcgcgtagcctgaaa
aaaggggcgcaaataatagtggctactccagggcgtatgcaggatatgatacgccgcaat
tttgtggatattagccatattaactactgtgtgttagacgaggctgatgagatgctcaat
atgggcttttatgaagatataaccgctattttgtcgcatacccctaaggagaaaagtacg
tggcttttttcggctacgatgcctaatgaggttgcgcggatagctcgtcagtttatgcgt
aaacctatcgagataactgtcggcacacgcaatcaggcgagtagcactgtgcagcacgag
tattacgtggtaaatgggcgacataggtatcaggcactcaaacgattagcagatgccaat
cctgatattttctcggtagttttctgtcgtactaagaaagatacgcaagccgtagctgaa
aagttgatagaagatggttataatgcggcagccttacacggcgatttgagtcagaatcaa
cgcgatttagtgatgaagtcctttagggcacgccaaatacagatgctagtggctactgat
gtggcagctcgcggtatagatgtagatgatattacccacgtgatacattaccagcttcct
gacgagatagagacttataaccaccgcagtgggcgtacgggtagagctggtaagtcgggt
atttcgatggttctcgtacctaaaagtgagcttaggaagataaaggagatagagaagatt
atcaaacaaccttttgagcagaaggctttgcctacgggcattgaaatatgcgaaatacag
ctataccatttggctaacagtctgaagaatgtagaggtcaatccggctatagaagattat
ttgcctgccatttacaaagaattgcaacacatagaccgcgaagagcttatcaaaaaaata
tttgcggtagagtttactcgcttctttaattattacaaaaatgctgaagttttgccagaa
gaagacgcaaaagagagcagaaaaggaggcgatagcggtgaggtgcgttacttcatcaat
ataggtgagcgcgatggttatgattggaagacgcttaaggactttctgaaggctacgctc
aacttaggaagagatgatgtcttcaaagtagatgtaaaaaatagcttctctttctttaat
accgaagcagaccaagcggacttagtgatgagtacctttgctgattttagaatggacggc
aggtttatcaatgtagagatttctgacaaaggagcagggcgttcacgaggcgataaaaaa
ggcggcgaaagtaggagaaaaggagaagataagaagaaaggtgaaaagaaaggcgagaag
aaaagtcgtaaacagaagactgtagaggcttttgaacaggctttcaagaaaaagaaaaaa
cgaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system