KEGG   Carnobacterium sp. CP1: NY10_1341
Entry
NY10_1341         CDS       T04230                                 
Name
(GenBank) ATP-dependent RNA helicase YxiN
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
carc  Carnobacterium sp. CP1
Pathway
carc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:carc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NY10_1341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carc03019]
    NY10_1341
   03009 Ribosome biogenesis [BR:carc03009]
    NY10_1341
Enzymes [BR:carc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     NY10_1341
Messenger RNA biogenesis [BR:carc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     NY10_1341
Ribosome biogenesis [BR:carc03009]
 Prokaryotic type
  rRNA helicases
   NY10_1341
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 UTP25 SLFN-g3_helicase AAA_30
Other DBs
NCBI-ProteinID: ALV21949
UniProt: A0A0U3NL85
Position
complement(1397701..1399149)
AA seq 482 aa
MKKNTFEEFGIGEELVTALESLRYFKPTKVQEEVLPLALAEKDVIVESQTGSGKTVSFGI
PLCENVIWEENRPQALVLVPTRELALQVKEDITNIGRLKRIKVTSVFGKASFDKQKSELK
QKSHIVVGTPGRVLDHLQKGTMKVDKLRYLVIDEADEMLNMGFIDQMAAIIEFLPEERQT
LLFSATMPPEIERLASFYMKPDRAAIKIEMTEQSRPKIVQSYLKVEPEKKEQQLLDLLIV
ENPDSCMIFCNTQEAVNRLYTFLNKAGLPIDKIHGGMVQEDRFDVMDDFRKGKFRYLVAT
DVAARGIDIDNVTHVINYDVPVEKESFVHRTGRTGRAGKTGVALTLVTPKERPWWQEVRA
YVQQEISEITAPNARVVQSHKSAFEKKLQERLVVKRARNKELNQGITKIYFNGGKKKKLR
AVDFVGTLTNIPGIKADDIGIITIQENVTYVEVLNGKGPRVIEEMKDRTVKGKQLKVYKA
NK
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgaaaaagaatacatttgaagaatttggtattggagaagaactggtaacagcattagaa
agtttacgctattttaaaccgactaaagttcaagaagaagtactgccattggctttagca
gaaaaagatgtgattgttgagtcacaaactggcagcggaaaaaccgtgagctttggaatc
ccattatgcgaaaacgtgatatgggaagaaaacagaccccaagcccttgttttagtacct
acgagagaattagcattgcaagtaaaagaagacattacgaatattggtcgtttaaaacgt
atcaaagtaacctctgtattcggcaaagcttcttttgacaagcaaaagtctgagttaaaa
caaaagagccatattgtagtagggacacctggtcgtgtcttggaccatttacaaaaagga
acgatgaaagttgataaattgcgttatttagtgatcgatgaagcagatgagatgctgaat
atggggttcattgaccaaatggcagctattatagagtttttgccagaagaacgacaaact
ctattgttctcggctacaatgccgccagagatagaacgtttggctagtttctatatgaaa
cccgacagagcagctattaaaatcgaaatgacagaacaatcaagacctaaaatcgtacaa
tcataccttaaagtcgaacctgagaaaaaggaacagcagttgttggatttattgatcgtt
gagaatccagacagctgtatgattttctgtaacactcaagaagccgtgaatcgtttgtac
acgttcttaaataaagcgggtttgccgattgataaaattcatggcggtatggtgcaagaa
gatcggttcgatgtgatggatgacttcagaaaagggaagttccgttatttagtcgcaaca
gatgtagcagctcgagggatcgatatcgataatgtgacgcatgtcatcaattacgatgta
cccgtagaaaaagaaagtttcgtacaccgaacaggacgaacagggcgtgccgggaagaca
ggagtagcactgactctggtcactccaaaagaaagaccttggtggcaagaagttagagca
tacgtgcaacaagaaatttctgaaatcactgctccaaatgctcgcgttgtacaaagtcat
aaatcggcttttgaaaagaaacttcaagaacggctggttgtgaaaagagctcgtaacaag
gaactgaatcaagggatcacaaaaatttattttaacggcgggaaaaagaaaaaacttcgc
gcagtggattttgtcggtacgttgacgaatattccgggaatcaaagcagatgatatcggt
attattactattcaagaaaatgttacctatgtagaggtattgaatggaaaaggtccgaga
gtcattgaagaaatgaaagatcgtacggttaagggaaaacaattaaaagtctataaagca
aataaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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