KEGG   Carnobacterium sp. CP1: NY10_2178
Entry
NY10_2178         CDS       T04230                                 
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
carc  Carnobacterium sp. CP1
Pathway
carc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:carc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NY10_2178
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:carc03019]
    NY10_2178
   03016 Transfer RNA biogenesis [BR:carc03016]
    NY10_2178
Enzymes [BR:carc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NY10_2178
Messenger RNA biogenesis [BR:carc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NY10_2178
Transfer RNA biogenesis [BR:carc03016]
 Prokaryotic type
  tRNA degradation factors
   NY10_2178
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: ALV22765
UniProt: A0A0U3NNL1
Position
2274112..2276502
AA seq 796 aa
MKNKETIKEAILVFMKEQKKMSFQVKEISEGMELTSSTDFKLLVSTLAEMEREGTVFLNK
KGQFKLPTEEPVLSGTFRASDRGFGFVSIEGEEDDVYIPPNHTNFALDGDTVTIEIIRPA
QPWLEKGAEGRVKAIIERKFTQLVGEFYAYTEEGIEETGLYGYIEPKDKKLTDIRVFIEE
KGIKPVDGAIVLVEITLYPDNEFPRSMQGIVKTVIGHKNDPGVDILTIIYKHGIQVEFPD
EVMAEANTVSEKVSQKDMEGRRDLREEILVTIDGEDAKDLDDAVTVKKLPNGNYHLGVHI
ADVSYYVTEGSALDTEAYDRATSVYLTDRVVPMLPHRLSNGICSLNPNEDRLAMSCEMEI
DQTGVVINHDIFPSVIRSYRRMSYTQINKILMEQDETVRKEQEDLVPMFELMGELHRLLE
KKRVSRGSIDFDSPEAKIIVDPEGHPLDIVLQERGIGERLIESFMLSANETVSEHYTHMK
VPMIYRVHEQPDSDRMQRFMEFVTAFGISMKGSSENVTPKNLQKVLDSVAGKPEEPVIST
MMLRSMKQAKYDVEPLGHYGLAAKYYSHFTSPIRRYPDLILHRLIRSYGEAGTGSAQIAK
WEAQLPDIALQSSKMERRAVDAERETDALKKTEYMMDKVGEEYEGIIGSVLRFGLFIELP
NTVEGLVHISNMKEDYFNYIEDQLMLVGERTGVVYRIGQKVKIKVTKADPETREIDFELI
PDPDAPKADSFPQLQKNGTQHKNKGSKPKPGQGASKNPKEKQSYRNKETKRSKDKKKNKP
FYKDVAKKNSVKKKRS
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgaaaaataaagaaaccataaaagaagccatattagtctttatgaaagaacaaaagaaa
atgtcttttcaagtaaaagaaatcagtgaagggatggagttgaccagttcaactgatttt
aaactgcttgtctccactttagctgaaatggaacgtgaaggaaccgtattcctcaataag
aaagggcagtttaaattgcctacagaagaacctgtcttgtcgggtacttttcgagcaagt
gaccgcggctttggtttcgtatcgattgaaggggaagaagacgatgtttacattccgcct
aaccatacgaatttcgccttagacggcgatacggtaaccattgaaatcattcgtccagca
caaccgtggttagaaaaaggtgcggaaggccgcgttaaagcgatcatcgaacgcaaattc
acccaattggttggtgagttttacgcatacacagaagaaggtattgaagaaacaggttta
tatggatacatcgaacctaaagacaaaaaattaaccgatattcgtgtgtttattgaagaa
aaaggcatcaagccagtagacggcgcaattgtcctagtcgaaatcacactttatcctgat
aatgagtttcccagaagtatgcaaggaatcgtaaaaaccgtgattgggcataaaaacgat
ccaggtgtcgatatcctaacgattatttataaacacggtattcaagtggaatttccagat
gaggtaatggcagaagctaatactgtttccgaaaaagtctcacaaaaagacatggaaggc
cgccgagacctgcgagaagaaattttagtgaccattgatggcgaagacgcaaaagattta
gatgatgcggtcacagttaaaaaacttcctaatggcaattaccatttaggggttcatatt
gctgacgtttcttactatgtaaccgaaggcagcgctttagatactgaagcttacgacaga
gcaaccagtgtttatttaactgaccgcgttgtaccgatgttgccgcacagattgtccaat
gggatctgttcgttaaaccccaatgaagatcgattagcaatgagttgcgaaatggaaatc
gaccaaaccggtgtagtcatcaaccacgatattttcccaagtgtcatccggtcttatcgc
cgcatgagctatactcaaatcaataaaattttgatggagcaagatgaaactgttcgaaaa
gaacaagaagatttagttccaatgtttgaactgatgggagagctgcaccgccttcttgag
aaaaaacgggtcagccgcggatcaattgattttgattctccagaagctaaaattattgtt
gatccagaaggacatccgttagatatcgtattacaagaacgcggtattggcgaacgcttg
attgaatcctttatgttatccgctaacgaaacggtttctgaacattacacacatatgaaa
gttccaatgatctatcgtgtccatgagcagccggatagcgatcggatgcagcgttttatg
gaatttgttacagctttcggcatttccatgaaaggttcaagtgagaacgtcacaccaaaa
aacttgcaaaaagttttagacagtgtagccggaaaaccagaagaacctgttatttcaact
atgatgttgcgcagtatgaaacaagcgaaatacgatgtagagcctctgggtcactatggg
ttagctgctaaatactattcgcatttcacgtcaccaattcgtcgttatccagatttgatt
cttcaccgccttattcgttcttatggcgaagcaggaacaggatccgctcagattgctaaa
tgggaagctcaattgcctgatattgcgcttcaaagttctaaaatggaacgccgtgcagtg
gatgctgaacgagaaacggatgctttgaagaaaacagaatatatgatggataaagttgga
gaagagtatgaagggatcatcggctctgttttaagatttggtctgtttatcgaattgccg
aatacagttgaagggttagttcatatttcaaatatgaaagaggattacttcaattatatc
gaagaccaattgatgttagtcggcgaacgtaccggagttgtgtatcgtattggacaaaaa
gttaaaatcaaagtaactaaagcagatccggaaacacgtgaaattgattttgaattgatc
ccagacccagatgcaccaaaagccgattcttttccgcaattgcaaaaaaatggcactcag
cataaaaataaaggctctaaaccaaaacctggacaaggagcatccaaaaaccctaaagaa
aaacaatcgtatcgtaataaagagacgaaacgttcaaaagacaaaaagaaaaacaaacca
ttctacaaagatgtcgctaagaagaatagtgttaaaaagaagcgcagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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