KEGG   Collimonas arenae: LT85_0053
Entry
LT85_0053         CDS       T03512                                 
Symbol
rtcB
Name
(GenBank) Protein RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
care  Collimonas arenae
Brite
KEGG Orthology (KO) [BR:care00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:care03016]
    LT85_0053 (rtcB)
Enzymes [BR:care01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     LT85_0053 (rtcB)
Transfer RNA biogenesis [BR:care03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    LT85_0053 (rtcB)
 Prokaryotic type
   tRNA splicing ligases
    LT85_0053 (rtcB)
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: AIY39213
UniProt: A0A0A1F3A2
Position
complement(67420..68628)
AA seq 402 aa
MPIKQSLHKGLVPVHIFTDDIDHSALQQLLNIANLPIVYPHVAAMPDVHAGIGATVGSVI
PTRAAIIPAAVGVDIGCGMNAVRTTLTASQLPDNLARLRSAIEAAIPVGFEQHEWNKVRG
SAHARVGRPLNDRLDRIVAKHKGIMKMQHKFAQTWICQIGTLGGGNHFIEICLDEEQRVW
IMLHSGSRGIGNVIGRYFISAAKKDMARNHVNLPDKDLSYFSEGSLLFDDYVDAVDWAQD
YALINRREMMRRTVDVLTQQLPPFKLDGEAINCHHNYVSREMHGNENLFITRKGAISARA
GELGIIPGSMGAKSYIVRGKGNPESFCSCSHGAGRRMSRTEAKRRFSRFDLADQTLGIEC
RKDGGVVDEIPAAYKDIDQVMAHQTDLVDEVHTLRQVICIKG
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgccaatcaaacagagcttgcacaagggcctggtgcccgtgcacatatttaccgacgat
atcgatcacagcgcgctccagcagctgctcaatatcgccaacctgccgatcgtgtatccg
cacgtggcggcaatgccggacgtccatgccggcatcggcgccaccgtcggcagcgtgatt
cctacccgcgccgccatcattccggcagcggtcggggtcgatatcggctgcggcatgaat
gcagtccgtaccacgctgacggccagccagctgccggacaacctggcgcgcctgcgcagc
gccattgaagcggcgattccggtcggcttcgaacagcatgagtggaacaaggtgcgcggt
tcggcccatgcacgcgtcggccggccgctaaacgaccggctggaccggatcgtggccaag
cacaagggcatcatgaagatgcagcacaaatttgcccagacctggatttgccagatcggc
acgctgggcggcggcaaccacttcatcgagatctgcctggacgaagaacaacgggtctgg
atcatgctgcattccggctcgcgcggcatcggcaacgtgatcggacgctatttcatttcc
gccgcaaaaaaggatatggcccgcaaccatgtcaacttgccggacaaggacctgtcttac
ttcagcgaaggatcgctgctgttcgacgattacgtcgacgccgtcgactgggcgcaagac
tatgccttgattaaccgtcgcgaaatgatgcggcgcacggtcgacgtgctgacgcagcaa
ctgccgccgttcaaactcgatggcgaagcgatcaactgccatcacaactatgtatcgcgt
gagatgcacggtaatgaaaacctgttcatcacccgcaaaggagcgatctcggcgcgtgca
ggcgagctcggcatcattcctggcagcatgggcgctaagagctacatcgtgcgcggcaag
ggcaatccggaatcgttctgttcctgctcgcatggggcagggcggcgcatgagccggacc
gaagccaagcgtcgcttcagccgcttcgacctggccgaccagacactgggaatcgaatgc
cgcaaggatggcggcgtagtcgatgaaattccagccgcctacaaggacatcgaccaggtc
atggcgcatcagaccgatctggtcgacgaggtgcacacgctgcgccaggtcatttgcata
aaaggatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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