KEGG   Serpentinimonas maccroryi: SMCB_0050
Entry
SMCB_0050         CDS       T03627                                 
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit/40 kD subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
cbab  Serpentinimonas maccroryi
Pathway
cbab03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cbab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SMCB_0050 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbab03021]
    SMCB_0050 (rpoA)
   03400 DNA repair and recombination proteins [BR:cbab03400]
    SMCB_0050 (rpoA)
Enzymes [BR:cbab01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SMCB_0050 (rpoA)
Transcription machinery [BR:cbab03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SMCB_0050 (rpoA)
DNA repair and recombination proteins [BR:cbab03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SMCB_0050 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RNA_pol_L_2 DUF211 DUF6165 RAD51D_N
Other DBs
NCBI-ProteinID: BAO82278
UniProt: A0A060NRX2
Position
48004..48990
AA seq 328 aa
MLNNLLKPKNIQVEHLGPNHAEVTLEPFERGYGHTLGNALRRVLLASMVGHAPTEVTISG
VLHEFSSIDGVQEDTVDMLLNLKGVVFKLHGRDEVTLSLRKEVEGLVTAGDIQTPHDVEI
LNPQHPIATLSAGTKLDMQIKVEKGRGYVPGNLRRGEDSTRSIGRILLDASFSPVKRVSY
AVENARVEQRTDLDKLVLDIETNGAVAPEEAVRAAAKILVEQLAVFAQLVRDESSDFGAS
PSRASQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN
EIKEVLASRGLTLGMKLESWPPAGLDKH
NT seq 987 nt   +upstreamnt  +downstreamnt
atgcttaacaatctcctgaaacccaagaacattcaagtcgagcacctcggccccaaccac
gccgaagtcacgctcgagccctttgagcgcggctatggccacacgctgggcaacgcgctg
cgccgggtgttgttggcttcgatggtcggccacgctcccaccgaggtcaccatctcgggt
gtgttgcatgagttttcttcgatcgacggcgtgcaagaagacactgttgacatgctgctc
aacctcaaaggcgtggtgttcaagctccacggccgcgacgaagtcaccttgagcctgcgc
aaagaggtcgaaggcctggtcacagcgggcgacatccagaccccgcacgacgtggaaatc
ctgaatccgcagcaccccatcgccaccctgagcgcgggcaccaagctcgacatgcagatc
aaggtcgagaagggccgcggctacgtgcccggcaacctgcgccgcggcgaggacagcacg
cgctcgatcggccgaattttgctcgatgcctctttttcgccggtcaagcgcgtcagctac
gcggtggaaaacgcccgcgtcgagcagcgcaccgacctcgacaagctggtgctggacatc
gaaaccaacggtgccgtggcacccgaggaagcggtgcgcgccgcggccaagattctggtc
gagcagctggcggtgtttgcccagttggtccgcgacgaatcgtccgactttggcgcctcg
cccagccgcgcttcgcagcagtttgacccgattttgctgcgcccggtcgatgagctcgag
ctcacggtgcgctcggccaactgcctcaaggccgaaaacatctactacatcggtgacctg
atccagcgcaccgaaaacgagctgctcaaaacccccaacctgggtcgcaagtcgctcaac
gaaatcaaggaagtgctggcttcgcgcggcttgacgctgggcatgaagctggagagctgg
ccgcccgctgggctggacaagcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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