KEGG   Clostridium beijerinckii NCIMB 8052: Cbei_0429
Entry
Cbei_0429         CDS       T00547                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
cbe  Clostridium beijerinckii NCIMB 8052
Pathway
cbe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cbe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Cbei_0429
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbe03400]
    Cbei_0429
Enzymes [BR:cbe01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Cbei_0429
DNA repair and recombination proteins [BR:cbe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Cbei_0429
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 PIF1 Helicase_RecD PhoH AAA_22 DEAD HHH_2 AAA SLFN-g3_helicase nSTAND3 AAA_28 AAA_12 NTPase_1 ATPase_2 DNA_pol_lambd_f SRP54 AAA_23 AAA_29 SMC_N AAA_18 T2SSE HHH_3 cobW ABC_ATPase MeaB UvrD_C ABC_tran AAA_16 MobB UvrD-helicase TrwB_AAD_bind
Other DBs
NCBI-ProteinID: ABR32617
UniProt: A6LQI7
Position
518230..520458
AA seq 742 aa
MEVLNGFVENIVFKSEDTGYVVCRIRNEKTLISAVGTVPFLREGQNVKLTGYWTVHKQFG
NQFNIQDYEELLPNSLDGIEKYLSAGIIHGIGPVTAKKIIERFGEETLDIMENHIERLME
IEGIGEKKFQIIYESYIEQQGLKDIILYFHKHGVTNNQCVKIYKKFGANARQIVSDNPYI
LCDEISGIGFKTADRIAMSIGIEKNSEFRIQSGIKYVMNQFCSAGNTFMPKNNIIEECEN
NLLISKELIEKNIYDMAAQQKIIVENINGTEVGFLLQYYYCELGVTSKIITLGLQQIQTI
NSDIDFEINVFEKEQNIKFAESQREAIIGAFNNGIEIITGGPGTGKTTIIKAIIHIYENN
GMKVILGAPTGRAAKRMTESTGREAKTIHRLLEMGISEDDESVFEKGESSPLDCDVIIID
EASMIDIILMQNLLKAINLGTRLIIVGDVDQLPSVGPGNVLKDLIESDYIKVVRLKEIFR
QGSESLIVVNAHRINEGQMPLLNQKDRDFFFISEDNQERIANTIMDLINRRLPKFNKSWN
KLKDMQVLTPMRKGVLGVTNLNTKLQEMFNASSKDKKEKTSRDIIFREGDKVMQTKNNYT
LKWIRVSGYGENEGVGVFNGDLGFIESIDEERKTLTIIFDEERKVIYDFNFLDELDLAYA
TTIHKSQGSEFKVVIIPVFMGSPFLMNRNLLYTGITRAKQLVVVVGFQKALMYMINNTNS
IERYSSLRYRIREIITKDEFEE
NT seq 2229 nt   +upstreamnt  +downstreamnt
atggaagttctaaatggatttgttgagaatattgtttttaaaagtgaagatactggttat
gtcgtttgtagaattagaaacgaaaagacattaattagtgctgtaggaacagttcctttc
ttgagagaaggacaaaatgtaaagttaacaggatactggacagtacacaaacaatttggt
aatcaatttaatattcaggattatgaagaacttcttccaaattcattagatggcatagaa
aaatatttaagtgcaggaataatacatggaattggaccagttacggctaagaaaataata
gagagatttggtgaagaaactctagacataatggaaaaccatattgagaggcttatggag
atagagggtataggggaaaagaaatttcaaataatatatgaatcctatatagagcaacaa
ggtttaaaagatataatcttatattttcataaacacggagtcactaataatcagtgtgta
aaaatatataagaaatttggtgcaaatgcgaggcagatagtatctgataatccatatata
ttatgcgatgaaatatcgggaattgggtttaaaacagctgacagaattgctatgagcatt
ggcattgaaaagaattcagagtttagaattcaaagtggcattaaatatgttatgaatcaa
ttttgctctgcaggaaacacatttatgcctaaaaataatataatagaagaatgcgaaaat
aatttgttaatatctaaggaattaattgaaaaaaatatatatgacatggctgcgcaacaa
aaaattattgttgaaaacataaacggtactgaagtcggatttttgcttcaatattattat
tgcgagctaggtgttactagtaaaataataactttaggtttgcagcaaattcagactata
aactcggatattgatttcgaaattaacgtttttgaaaaggaacaaaatataaaatttgca
gaatcacaaagagaagcaattattggcgcatttaataatggtatagaaataattaccggt
gggccaggaacagggaagactacaattataaaggcaataatacatatatatgagaataat
ggaatgaaagtaatacttggggcaccaacaggaagagctgcaaagaggatgactgaatca
acagggagagaagctaaaacaatacatagactattagaaatgggaatttctgaggatgat
gaatcagtatttgaaaaaggagaatcatcgcctctagattgtgatgtaataataattgat
gaggcgtctatgattgacattatcttaatgcagaatctactaaaagcaattaatttagga
actaggttgataattgtgggagatgttgatcaattaccttctgttggaccaggaaatgtg
ctaaaagatcttatagaaagcgattatataaaggtggtaagattaaaagagatatttagg
caaggatcagaaagtttaattgtagtaaatgctcatagaataaatgagggacagatgcct
ttgctaaatcaaaaagatagagattttttctttattagcgaagataatcaagaaagaatt
gcaaatactataatggatctaataaatagaagactccctaagtttaataagtcttggaat
aaactgaaggatatgcaggttttaactcctatgagaaaaggtgtgcttggagtcacaaat
ttaaatacgaagcttcaagaaatgtttaatgcatcatcaaaagataaaaaggaaaagact
tctcgagatataattttcagagaaggtgataaggtaatgcaaacaaaaaacaattataca
ttaaagtggattagggttagtggttatggcgaaaatgaaggagtgggagtttttaatggt
gatctgggattcatagaaagcatcgatgaagaaagaaaaacactcacaatcatatttgat
gaagaaagaaaagttatatatgattttaattttttagatgagttggatttggcttatgct
actacaatacataaaagccaaggaagtgaatttaaggttgtaataattccggtatttatg
ggatcgccatttcttatgaatcgtaatttgctttatacaggtattacgagggcaaaacaa
ttagtagtagttgttgggtttcaaaaagcattaatgtatatgattaataatacaaatagt
atagaaagatactcatctttgagatatagaataagagagataataaccaaagatgaattc
gaagaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (38)   
   Pfam (38)   
All databases (48)   

Download RDF
DBGET integrated database retrieval system