KEGG   Clostridium botulinum F Langeland: CLI_2876
Entry
CLI_2876          CDS       T00563                                 
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
cbf  Clostridium botulinum F Langeland
Brite
KEGG Orthology (KO) [BR:cbf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cbf03016]
    CLI_2876 (ligT)
Enzymes [BR:cbf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     CLI_2876 (ligT)
Transfer RNA biogenesis [BR:cbf03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    CLI_2876 (ligT)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: ABS40648
UniProt: A7GH44
Position
complement(3021436..3021972)
AA seq 178 aa
MRKTRVFYAVTFYEEAKEKLIEYKNIVVNNSVKGRFTNKNNFHLTLEFIGEVDEKKLSLL
TNILYKLQNPPKEVVTSYIGSFKRRDKEIIWLGIEENKCLITLQRELRNLLINNGFQIED
RRYKPHITIGREIVRKGFIEKNIFQPLHIPIASIALMESKRVNNQLVYEPLEEQILVV
NT seq 537 nt   +upstreamnt  +downstreamnt
gtgagaaaaacgagagtattttatgcagttacattttatgaagaagcaaaagaaaaatta
atagagtataaaaatatagttgttaataactcagttaaaggtagattcacaaataaaaat
aattttcatttaactttggagtttataggtgaagttgatgaaaaaaagttatctttacta
actaatatactatataagttacagaatccacctaaggaagtggttacttcctatattggc
tcatttaaaaggagagataaggagataatttggcttggaattgaagaaaataaatgtctt
atcacattgcaaagagaattaagaaatttattaattaataatggattccaaattgaggat
agaagatataagcctcatattacaattggtagagaaatagtaagaaagggttttatagag
aaaaatattttccaacctctacatattccaatagcttcaatagctcttatggaaagcaag
agagttaataaccagttagtttacgaaccattagaagagcaaattttagtagtataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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