KEGG T02076: H04402

Clostridium botulinum H04402 065: H04402_02906

Entry

H04402_02906      CDS       T02076

Name

(GenBank) 2'-5' RNA ligase

K01975

RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]

Organism

cbj Clostridium botulinum H04402 065

Brite

KEGG Orthology (KO) [BR:cbj00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cbj03016]
    H04402_02906
Enzymes [BR:cbj01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     H04402_02906
Transfer RNA biogenesis [BR:cbj03016]
Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    H04402_02906

SSDB

Motif

Pfam:

LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS

Other DBs

NCBI-ProteinID:

CBZ04710

Position

complement(3018982..3019509)

AA seq 175 aa
MRVFYAVTFYEEAKEKLIEYKNIVVNNSVKGRFTNKNNFHLTLEFIGEVDEKKLSLLTNI
LYKLQNPPKEVVTSYIGSFKRRDKEIIWLGIEENKCLITLQRELRNLLINNGLQIEDRKY
KPHITIGREIVRKGFIEKNIFPPLHIPIASIALMESKRVNNQLVYEPLEEQILVV

NT seq 528 nt +upstreamnt +downstreamnt
atgagagtattttatgcagttacattttatgaagaagcaaaagaaaaattaatagagtat
aaaaatatagttgttaataattcagttaaaggtagattcacaaataaaaataattttcat
ttaactttggagtttataggtgaagttgatgaaaaaaagttatctttactaactaatata
ctatataagttacagaatccacctaaggaagtggttacttcctatattggctcatttaaa
aggagagataaagagataatttggcttggaattgaagaaaataaatgccttatcacattg
caaagagaattaagaaatttattaattaataatggattgcaaattgaggatagaaaatat
aagcctcatattacaattggtagagaaatagtaagaaagggttttatagagaaaaatatt
tttccacctctacatattccaatagcttcaatagctcttatggaaagcaagagagttaat
aatcaattagtttacgaaccattagaagagcaaattttagtagtataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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