KEGG   Clostridium botulinum A ATCC 3502: CBO0224
Entry
CBO0224           CDS       T00533                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
cbo  Clostridium botulinum A ATCC 3502
Pathway
cbo02020  Two-component system
cbo02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cbo00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CBO0224 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    CBO0224 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbo03021]
    CBO0224 (rpoN)
Transcription machinery [BR:cbo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CBO0224 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_Crp_2 HTH_23 HTH_12 Sigma70_r4 HTH_38 HTH_17 HTH_21 HTH_IclR HTH_3 Sigma70_r4_2 HTH_29 MarR HTH_36 Phage_CII HTH_11 HTH_5 HTH_Tnp_ISL3 HTH_20 MarR_2
Other DBs
NCBI-ProteinID: CAL81776
UniProt: A5HYB7
Position
264407..265780
AA seq 457 aa
MNMNFGLSLTQEQKLIMTQQMQLSIKLLQMSTYELQQYVEKEVQENPVLDSQNIHKEDKG
IEDINYKKLIKHLEDNGNEYGSYSSYNKEEETSPFNFISNEKSLKEYLQEQIIELNENKY
IKSICIYIIENIDDKGYLSVRDEEISEELKVPLHSIEEAIDIVQSLEPDGIGARNLKECL
KIQLKKKSINNSKICEIIDNFLPLVAENRYNVISKKLSISIKKAQEYGDVIKTLQPKPSR
GFYTGDEVKYIVPDAYIKKIDNEYYIIMNEELLPKLTVNNLYKDIVLNDTDENAVEFVKE
KLNSAIFLIKSIENRKSTIYRVLEKILEIQRDYFDLGIKFLKPMTLKEIADSLGMHESTI
SRAIRDKYINTNRGTILIKDLFTTGITANNSTGEDISVEFIKREIKELIDKEDKKKPISD
QIICNILNNKGIQISRRTVAKYREELGIQSSKCRKRF
NT seq 1374 nt   +upstreamnt  +downstreamnt
atgaatatgaattttggattgtccttaacacaggaacaaaagttaataatgacacaacaa
atgcagctatctattaaacttcttcagatgtctacctatgagttacaacaatatgttgaa
aaggaagttcaagaaaatcctgttttagattctcagaatattcataaagaagataagggg
atagaggatataaattataaaaaattaatcaaacatttagaggataatggaaatgaatat
ggtagttatagtagctacaataaagaagaagaaacctcaccttttaattttatatctaat
gaaaaatcattaaaagaatacttacaagaacaaattatagaattaaatgaaaacaaatac
ataaagtccatatgcatatacataatagaaaatatagatgataaagggtacttatctgta
agggatgaggaaatatctgaggaattaaaagtaccattacattcaatagaagaagccata
gatatagtacagtcgttagaaccagatgggataggtgcgaggaatttaaaagaatgttta
aagatacaattaaaaaagaaatccataaataatagtaaaatatgtgaaattatagacaat
ttccttcctctagtagcagaaaataggtataatgttatatctaaaaaacttagtatatca
ataaaaaaggctcaggaatatggcgatgttataaagactcttcagcctaagccttcaaga
ggattttatactggtgatgaagtaaaatacatagttccagatgcatatataaaaaaaata
gataacgaatactatataattatgaatgaagagctattgcctaagttaacagtaaataat
ttatataaagacatagttttaaatgatactgatgaaaatgcagtagaatttgtaaaagaa
aaattaaatagcgctatttttttaattaaaagtatagaaaatagaaaatctacaatttat
agagtattagaaaaaattttagaaatacaaagggattattttgatttaggaattaagttc
ttaaagcctatgacattaaaggaaatagccgatagtttaggtatgcatgagtctactata
agtagagctataagagataaatatataaacactaatagagggaccatacttataaaagat
ttatttactacaggaattactgctaataatagtacaggagaagatatttctgtagaattt
ataaaaagagaaataaaagaactaatagataaagaagataagaaaaagccaatatctgat
caaataatatgtaatatattaaataataaaggcatacaaatatccagaagaactgtagct
aaatatagagaggaactaggaatacaatcttcaaaatgtagaaagcgtttttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (22)   
   Pfam (22)   
All databases (31)   

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