KEGG   Clostridium butyricum: ATN24_11540
Entry
ATN24_11540       CDS       T04197                                 
Name
(GenBank) RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
cbut  Clostridium butyricum
Pathway
cbut03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbut00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ATN24_11540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbut03019]
    ATN24_11540
   03009 Ribosome biogenesis [BR:cbut03009]
    ATN24_11540
Messenger RNA biogenesis [BR:cbut03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ATN24_11540
Ribosome biogenesis [BR:cbut03009]
 Prokaryotic type
  rRNA helicases
   ATN24_11540
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_30 PrkA AAA_19
Other DBs
NCBI-ProteinID: ALP91850
Position
1:complement(2570042..2571484)
AA seq 480 aa
MKNEFSKFNISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDVIVKSQTGSGKTAAFAIP
ICEKVDWNENAPQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQ
KTHVVCGTPGRVLDHIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTT
LFSATISDEIRTLCEKYMDRPVDISIEKQKVVNDNIEHGLYYVDYNERFKLLNELLICEK
PETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSAMDSFRKGEFRILSATDV
AARGIDIENITHVINFELPVEKEAYVHRIGRSGRAGKSGKAISICSKHGDRYLKNIEEYI
GFGIPVKEHFTKEFISENLESGISYLKSKPKKKTEKAKAINNDITKIYLNGGKKKKIRAG
DIVGAISRIDGLTGDDIGIIDVQDNISYVDILNGKGKKVLDALKNITIKGKKLKCDRAKK
NT seq 1443 nt   +upstreamnt  +downstreamnt
atgaaaaatgaatttagtaagttcaatataagtgaagaaattttaaaagcagttgatgga
ttgggatataaaaaaccatcagaagtacaggaaaaagttattccagaaattatattaaat
aaagacgttatcgtaaaatcacagacaggaagtggaaagacagcagcctttgcaattcct
atatgcgaaaaagtagattggaatgaaaatgctccacaagtacttgttttaagtccaact
agagagctggctgtacaggttagtgaagattttgtgaatattggaaggtttaaaaggatt
aaatctgttgcagtatttggaaagcagcctataagtgagcaggcaagagctttaaaacaa
aagacacatgtagtatgtggtactccaggaagagtgcttgatcatattgacagaggaagt
cttgatgtgaaaaagataaaatattttgtaattgatgaagctgatgaaatgttgaatatg
gggtttatagggcaggttgaaggtgttataagaagacttcctaaaaagaaagttacaaca
cttttttcagcaactatttcagatgaaataagaactttatgtgaaaaatacatggataga
ccagtggacatttcaatagaaaagcagaaagtggtaaatgataatattgaacatggttta
tattatgttgattacaatgaaagatttaaattattaaatgaacttcttatatgcgaaaaa
cctgaaacggcagtgatatttggaagaacaaaagaaaatgttgatgagatttataatttc
ttaaaatcaaaaggttattcatgtggaagaattcatggtggaatgcttcaaaaagagagg
ttatctgcaatggatagttttagaaaaggagaatttagaattctttcagctacagatgtt
gctgcaagaggaattgacatagaaaatataacacatgtaataaattttgagcttccagtt
gaaaaagaagcttatgtacatagaataggaagaagcggaagagcaggaaaatcaggaaag
gccatatcaatatgttctaaacatggcgatagataccttaaaaatatagaagaatatatt
ggatttggaatacctgtaaaagaacactttacaaaggaatttataagtgaaaatttagaa
tctggaatatcatatcttaagtctaagcctaagaaaaaaacagaaaaagccaaggctatc
aataatgatataacaaaaatatatctaaatggaggcaagaaaaagaaaataagagcagga
gatattgtaggtgctatttcgagaatagatggattaactggagatgatatcggaataata
gatgttcaagataatatatcttatgttgatatattaaatggaaaaggaaaaaaagtactt
gatgcattaaaaaatattactattaaaggtaaaaaactaaaatgtgatagggcgaaaaaa
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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