KEGG   Candidatus Symbiobacter mobilis: Cenrod_2321
Entry
Cenrod_2321       CDS       T02877                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cbx  Candidatus Symbiobacter mobilis
Pathway
cbx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Cenrod_2321
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbx03019]
    Cenrod_2321
   03016 Transfer RNA biogenesis [BR:cbx03016]
    Cenrod_2321
Enzymes [BR:cbx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Cenrod_2321
Messenger RNA biogenesis [BR:cbx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Cenrod_2321
Transfer RNA biogenesis [BR:cbx03016]
 Prokaryotic type
  tRNA degradation factors
   Cenrod_2321
SSDB
Motif
Pfam: RNB OB_RNB S1 CSD2 RNase_II_C_S1 zf-FLZ
Other DBs
NCBI-ProteinID: AGX88383
UniProt: U5NDV0
Position
complement(2552724..2554832)
AA seq 702 aa
MADNTADGVVHGHRSGHGFVVRDDGGADIYLSPLEMRAVLHLDRVRVSIVQEQNAHRGHR
GQRNHRIQGRVLQLLERASGNILGRLVCEEKQWRVLPQNGRHGTTIAVDGKGLNASHINQ
IVVVEPIPAAQIGGLPCGAIREFLGPADSAATVIEVTARKYALPRSFSAPCLAMARSLPN
HVRAIDRRGRVDLTGLPLVTIDGEDARDFDDAVYCAPIAQQGDIPGGWRLIVAIADVGHY
VPCGSDIDLDAYERATSVYFPGRVLPMLPESLSQGLCSLNPDVLRLCLACDMHIGPEGDI
VSYRFDPGVLRSHARLTYDEANALLHDPSIASANASAHAPTHTPAHTPAHTDRIQDLRHL
HDVYQALLRARQQRGAMDLDTVETYVLCDAEGRVERIVPRQRNDAHRMIEEAMLAANVCS
ADLLRRNGHHALYRVHAAPTEEKLETLRLYLGALGVEASLGPQPKPADFQRIALATRDRP
DVLQIHTMLLRSMQQAMYTPSNAGHFGLAYEAYAHFTSPIRRYPDLLVHRVIRAILQRKR
YPLRPLPMPDASPTGSPALSALFALLRKKSSKELERWQAAGVHCSARERRADEAAREVDS
WMKCSYLQRHVGDVFHGTISAVTAFGLFVTLEPLYIDGLLHISALSGEYYAFDEERRELR
GTRSGKRYTAGQRVTVQVARIDPDERRIDLGWPTTARGTPAM
NT seq 2109 nt   +upstreamnt  +downstreamnt
atggcagataacacggcagatggcgttgtccacgggcaccgcagcggccacggcttcgtg
gtacgcgacgacggtggcgcggatatttacctttcccccctggaaatgcgcgccgtactg
catctcgaccgggtgcgcgtttccatcgttcaggagcaaaacgcccaccgtggacaccgt
ggccagcgtaatcaccgcatccaaggccgcgtgttgcaattgctggagcgggcttcgggc
aacatcctggggcgcctggtttgcgaagaaaaacagtggcgggtgttaccccaaaacgga
cgccatggcaccacgattgcggtcgatggcaagggcttgaatgcctcgcacatcaaccag
atcgtcgtcgtcgaacccatcccggcagcacagattggcggcttgccctgtggagcgatc
cgcgaattcctgggccctgccgactccgctgcgacggtgatcgaagtcaccgcccgcaaa
tacgccctaccccgctccttctccgccccgtgcctggccatggcgcgctcgctgccgaat
catgtccgcgccatcgaccgccgtgggcgggtcgacctgaccgggctgccgttggtgacg
atcgacggggaagatgcccgcgacttcgacgacgccgtctactgcgcccccatcgcccag
caaggcgatatcccggggggatggcggctgatcgtggccatcgcagacgtcggccactac
gtgccctgcggttccgacatcgacctcgacgcctacgagcgtgcgacgagcgtctacttc
cccggcagagtgttgcccatgctgcccgaatccctgtcgcaagggctgtgttcgctcaac
ccggatgtgctgcggctgtgcctggcgtgcgatatgcacattggccccgaaggcgacatc
gtgtcgtaccgcttcgatcccggcgtgctgcgcagccatgcccggttgacgtacgacgag
gccaacgccctgctgcacgatccatccatcgcaagcgccaacgcatcggcccatgcgccg
acgcatacaccggcccacacaccggctcatactgatcgcatacaggacttgcgccatctg
cacgatgtctaccaagccttgctgcgcgcacggcagcagcgcggggcgatggatctcgac
accgtcgaaacctacgtgctctgcgatgccgaaggccgggtcgaacgcatcgttccacgc
caacgcaacgatgcgcaccgcatgatcgaagaagccatgctcgcagccaacgtatgcagc
gccgacctgctgcgccgcaacggccaccacgcgctctaccgcgtacacgccgcccccacc
gaagaaaaactcgagacgctgcgcctctacctcggcgcgctcggcgtggaggcatcgctc
gggccacagccgaagcctgccgactttcagcgcatcgccctggccacgcgggatcgtccc
gatgtcttgcaaatccacacgatgttgctccggtcgatgcagcaagccatgtacaccccc
agcaacgccgggcacttcgggctggcctacgaggcctacgcgcacttcaccagcccgatt
cgccgttaccccgacttgctggtacaccgggtgatccgcgccatcctgcaacgcaagcgc
tacccgctgcgcccgctgccgatgccggatgcatcgcctacgggttcccctgccttgtca
gcgctctttgcgctcttgcgcaaaaaatcctcgaaggagttggaacgctggcaggcagca
ggggtgcattgcagcgcgagggaacgccgcgccgacgaagccgcccgcgaagtcgactcc
tggatgaaatgcagctacctgcaacgccacgtgggggacgtattccacggcaccatcagc
gccgtgacggctttcgggctgtttgtcaccctggaacccctgtacatcgacggcttgctg
cacatctctgccctgtctggcgaatactatgccttcgacgaagagcgcagagaactgcgc
ggcacccgcagtggcaagcgctataccgcaggccagcgcgtgacggtacaggtggcgcgc
atcgaccctgacgaacgacgcattgacctgggatggccaaccacagcacgcggtacgcct
gcgatgtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

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