KEGG   Cyanistes caeruleus (blue tit): 111926948
Entry
111926948         CDS       T05602                                 
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
  KO
K04556  parkin [EC:2.3.2.31]
Organism
ccae  Cyanistes caeruleus (blue tit)
Pathway
ccae04120  Ubiquitin mediated proteolysis
ccae04137  Mitophagy - animal
ccae04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ccae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    111926948 (PRKN)
   04120 Ubiquitin mediated proteolysis
    111926948 (PRKN)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    111926948 (PRKN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccae04131]
    111926948 (PRKN)
   04121 Ubiquitin system [BR:ccae04121]
    111926948 (PRKN)
   03029 Mitochondrial biogenesis [BR:ccae03029]
    111926948 (PRKN)
Enzymes [BR:ccae01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.31  RBR-type E3 ubiquitin transferase
     111926948 (PRKN)
Membrane trafficking [BR:ccae04131]
 Autophagy
  Mitophagy
   PINK1-Parkin associated proteins
    111926948 (PRKN)
  Aggrephagy
   Other aggrephagy associated proteins
    111926948 (PRKN)
  Xenophagy
   Other xenophagy associated proteins
    111926948 (PRKN)
Ubiquitin system [BR:ccae04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   RBR proteins
    111926948 (PRKN)
Mitochondrial biogenesis [BR:ccae03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-dependent mechanism factors
    111926948 (PRKN)
SSDB
Motif
Pfam: zf-RING_14 zf-RING_12 ubiquitin IBR Rad60-SLD Dsc3_N Rad60-SLD_2
Other DBs
NCBI-GeneID: 111926948
NCBI-ProteinID: XP_023779499
Position
3
AA seq 461 aa
VFVRFNSSHGFPVEVGSDSSILQLKEAVAQRQGVPADQLRVIFAGRELSNDLTLQNCDLA
QQSIVHIVQNPQNSHSKEKTEESCVGGVLKALKREPESLTRIDLSTSILPSVSAGLAVIL
DPGKNSVSLPSEKSGAASYNSFYVFCKNFCQAVKPGKLRVRCSVCKQGTLTLARGPSCWD
DVLIPNRIGGVCQSRGCNGNIAEFYFKCGAHPTADSETSVALNLITTNSRCITCITCTDI
RSPVLVFQCVHRHVICLDCFHLYCVTMLNDRQFIHDPELGYSLPCVAGCPDSLIKELHHF
RILGEEQYNRYQRYGAEECVLQMGGVLCPTPGCGAGLLPEPGLRRIVCQPGNGIGCGFVF
CRECKEEFHEGECNALLSPQGAMAQKGYVVDEHAAMQARWEEASRETIKKTTKPCPNCNI
PVEKNGGCMHMKCPRPQCRFEWCWNCGLEWNRTCMGDHWFD
NT seq 1386 nt   +upstreamnt  +downstreamnt
gtgtttgtcaggttcaactccagccatggcttccccgtggaggttggttcggattccagc
atcctccagctgaaggaggcagttgcccagcgacagggagttccagctgaccagctgcgg
gtgatttttgcagggagggagctcagcaatgacttgacactgcagaactgtgatctggcc
cagcagagcattgttcatattgttcagaatccacagaacagtcatagcaaggagaagaca
gaagaaagctgtgttggaggtgttctaaaagccttgaaaagggaacctgagagtttaact
cgcatagatctcagtacaagcatcctcccttcagtctctgcagggttggcagttattctg
gatcctggaaaaaacagtgtttcacttccctctgaaaaatcaggtgcagcaagttacaac
agtttttatgttttttgcaaaaatttctgccaagctgtgaagcctggaaaactgagggtc
cgctgcagtgtgtgtaaacaaggaaccctgacattggcaaggggcccatcttgctgggat
gacgtgctaattcccaacagaataggaggagtttgccagtcccgagggtgcaatggaaac
atagcggagttttactttaaatgtggagcacacccaactgctgacagtgaaacatctgtg
gctttgaacctcattacaacaaacagccgctgtatcacatgtataacatgcacagatatc
aggagtcctgtgcttgtgtttcaatgtgtgcatcgccatgtcatttgcctggactgcttc
catttgtactgtgtgaccatgctgaatgaccgccagttcatccatgacccagagcttggc
tattccctcccctgtgtagctggctgtccagattccttgattaaagaacttcatcacttc
aggattctgggagaagaacagtacaaccgctaccagcgctatggggccgaggaatgtgtg
ctgcagatgggaggagtgctgtgtcccacccccggctgtggggcaggtctgcttcctgag
ccagggctgaggagaatcgtgtgtcaaccaggcaacggaataggctgtgggttcgtgttc
tgccgtgaatgtaaagaagaattccatgaaggggaatgcaacgctctcctcagcccacag
ggagccatggcccagaaggggtatgtggttgatgagcacgcagccatgcaagctcgatgg
gaagaagcctctagagaaacaatcaagaagacaaccaagccatgccccaactgcaatatt
ccagtagaaaaaaatggtggctgcatgcacatgaaatgccctcgccctcagtgcagattt
gagtggtgctggaactgtggcctggagtggaacagaacctgcatgggagatcactggttt
gactag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (23)   

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