KEGG   Cyanistes caeruleus (blue tit): 111927668
Entry
111927668         CDS       T05602                                 
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
ccae  Cyanistes caeruleus (blue tit)
Pathway
ccae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111927668 (PNLDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccae03019]
    111927668 (PNLDC1)
Enzymes [BR:ccae01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     111927668 (PNLDC1)
Messenger RNA biogenesis [BR:ccae03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     111927668 (PNLDC1)
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 111927668
NCBI-ProteinID: XP_023780360
Position
3
AA seq 530 aa
MEVGAEGFARHLPRLRRLILRAAFVALDMEFTGLHSLQNNEPSLFDSPAERYVKARQSVQ
RFTLAQLGLAIFSAENSNKYVVHSYNFFLFPSTLGIRDVEFTLSASSIQFLSHYGFDYNK
FLKDGIPYMNEVQEKILRQHLLAGTWKVCSANNANRDVLKKAIDEVTSWIAAAKEEDTMI
LQDLNGYHMLEVQLVLRQALENVWTEPLGDKKVMVKKVSPKHRQLLENSSYDHCQKKLIL
LSARGFTNLFHILVKAKKPLVGHNMFMDLMHLHDKFYRPLPESYDEFKRNIHTLFPIIID
TKTVTKSVQKKCLFPRVSSLLEAYAVLCSSNLNPKGPPCPVIALASGCSRYAEKKCPHEA
GYDAFLCGSVLLMSAHLLLCRSTDDAVEADPSFSQYLTVLAEHVNKVNFIRGGVSSINLS
GEDAPCRHPPALVVHVRGWPGLTEGQIYQEFKARCRFDVRRLSKNQFVLLSQKYKHVRLV
LRDYRHHPHLQVSIYRHWRHSPSVNCLLQISGVVALWSLLAFVLGGARSC
NT seq 1593 nt   +upstreamnt  +downstreamnt
atggaggtgggcgcggagggctttgcccggcacctgccgcgcctcaggcgcctcatcctc
cgcgccgccttcgtggcccttgatatggagtttactggtttgcattctctacaaaacaac
gagcccagcctgtttgactcccctgcggagcggtatgtgaaggccaggcagagtgttcag
cgcttcactctcgctcagcttgggctggcaatattctcagcagaaaattcaaacaagtat
gtggtgcattcatacaacttttttctctttccctccacactgggaataagggatgtcgaa
tttaccctctctgcatctagtattcagttcctgtctcattatggctttgactacaacaag
tttctcaaagatggaatcccatacatgaatgaggtacaggagaagatccttaggcagcac
ctcttagcaggtacctggaaagtctgcagtgctaataatgcaaacagggatgtcctgaag
aaagctattgatgaagtgacctcttggatagctgcagcaaaagaagaggatactatgatt
ctgcaggatctgaatggctatcatatgcttgaagttcagctggttctgaggcaggctctt
gaaaatgtttggacagaacctcttggagacaagaaggtcatggtgaaaaaagtgagtcca
aagcatcgtcagcttctggagaactcttcttatgaccactgtcagaaaaagctcattctc
ctgtctgcccggggcttcaccaacctcttccatatacttgttaaagccaagaagcccctg
gtgggacacaacatgttcatggaccttatgcatcttcacgacaagttctacaggcctctc
ccagagagctatgatgagtttaaaaggaacattcacaccctgtttcccatcatcatagac
accaagactgtaacaaagtctgtgcagaagaaatgtctgtttcctcgagtatccagtctt
ttggaggcatatgcagttttgtgcagcagcaacctaaatcccaaaggtccaccgtgccct
gttatagctcttgcaagtggctgctcaagatacgctgagaagaaatgtcctcatgaggca
ggctatgatgcatttctctgtggttcagttcttctgatgtcagctcatttgctactgtgc
agatccacagatgatgcagtggaggctgatccttctttctcgcagtatctcaccgtgtta
gctgagcatgtgaacaaagtgaatttcatccgaggtggtgtttcaagcattaatttgtct
ggggaagatgctccttgccgtcatccccctgccttggttgttcatgtccgaggctggcca
gggctgaccgagggacagatttaccaagagtttaaagctcgctgtcgctttgatgtcaga
cggctttcaaagaaccagttcgttctgctctcccagaaatacaagcacgtcaggctcgtc
ctgcgggactacaggcaccaccctcacctgcaggtctccatctatcgccactggaggcac
tcgccgagcgtgaactgcctgctgcaaatctccggtgttgtggcactgtggtctctgttg
gcctttgtgctcggaggagctcgtagctgttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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