KEGG   Cyanistes caeruleus (blue tit): 111937751
Entry
111937751         CDS       T05602                                 
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
  KO
K07466  replication factor A1
Organism
ccae  Cyanistes caeruleus (blue tit)
Pathway
ccae03030  DNA replication
ccae03420  Nucleotide excision repair
ccae03430  Mismatch repair
ccae03440  Homologous recombination
ccae03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ccae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111937751 (RPA1)
   03420 Nucleotide excision repair
    111937751 (RPA1)
   03430 Mismatch repair
    111937751 (RPA1)
   03440 Homologous recombination
    111937751 (RPA1)
   03460 Fanconi anemia pathway
    111937751 (RPA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ccae03000]
    111937751 (RPA1)
   03032 DNA replication proteins [BR:ccae03032]
    111937751 (RPA1)
   03400 DNA repair and recombination proteins [BR:ccae03400]
    111937751 (RPA1)
Transcription factors [BR:ccae03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    111937751 (RPA1)
DNA replication proteins [BR:ccae03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    111937751 (RPA1)
DNA repair and recombination proteins [BR:ccae03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     111937751 (RPA1)
   MMR (mismatch excision repair)
     111937751 (RPA1)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     111937751 (RPA1)
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF5521 DUF223 DUF4939 IBR
Other DBs
NCBI-GeneID: 111937751
NCBI-ProteinID: XP_023794987
Position
19
AA seq 613 aa
MSVRLSEGAIAAIMQGEEVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEDERLSARCVCQVNRFIVNSLKDGRRVVILMDVNVLQTADQVGGPIGNPQPYNEG
QGQRSAAPAGNPAPSRPQQQNGNLSGAGPAAPKYHAPSNQFGKPSAPSAVKTPGGSQVKV
VPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSVELVDESGEIRATAFNDQADK
FFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFVA
ISDLENTPKDSIVDVIGICKSYEDVTKITVKASNREVSKRNVHLMDTSGKLVTATLWGNE
AEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLEC
TSISDVRGGPAAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKENCMYQACPSQ
DCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAEFILGQNA
AFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYSK
RLIANIRRNAQLG
NT seq 1842 nt   +upstreamnt  +downstreamnt
atgagcgtgcggctgagcgagggggccatcgcggccataatgcaaggggaggaagtctcc
aagcccgtgctgcaagtcatcaatacacgggctattgccacaggaactgggcccccacgt
taccgagtgctgatgagtgatggggtgaacaccctctcctcattcatgctggcaacacag
ctgaactccctggtggaagatgaacgtttgtcagcccggtgtgtttgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggttatcctgatggatgtaaacgtc
ctgcaaactgctgatcaggttggtgggcctattggcaatccccagccgtacaatgaagga
cagggtcaacgttctgcagctccagcaggaaacccagcacccagcagaccacagcaacaa
aatggcaatttgtctggagcaggtcctgctgctcccaagtaccacgctccctccaaccag
tttggaaaaccaagtgctcccagtgctgtgaagacacctgggggatctcaggtcaaagtg
gtgccaattgccagcttgaatccataccagtccaagtggaccatttgtgctcgtgttacc
caaaaaggtcagatccgcacgtggagcaactcccgtggtgaaggaaagctcttttccgta
gaactggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagacaag
ttctttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaagact
gctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgagact
tcagttgtgccctgtgatgatgcccagcatctcccatctgttcagtttgattttgtagcc
atctctgacttggagaacacgcccaaagactcgattgttgatgtaattggaatttgcaag
agctacgaagatgtcactaaaattacagtgaaagctagcaatagggaggtttcaaagagg
aatgtgcatctgatggatacatcagggaaactggtgacagctacgctgtggggaaatgag
gctgaacagtttgatggttccagacaacctgtgattgccatcaaaggagcccgtgtctct
gactttggtggcagaagcctgtctgtcctgtcctccagcacagttgtcatcaaccctgat
agcccagaggctttcaagctccgaggatggtttgactccgaggggcagcttctggaatgt
acctccatctctgatgtgaggggtgggccagcagctggagcaaataccaactggaaaact
ttgtttgaagccaaatctgagaacttgggacaaggagataaggcagattattttagctgt
gtgggcacaattgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctctcag
gattgcaacaagaaagtgatagaccagcaaaacggactttaccgctgtgagaagtgtgac
cgcgagttccccaacttcaaataccgcctgatgctcctggtgaccattgcagactgtctg
gaatatcagtgggtgacttgttttcaagacacagcagaattcattcttgggcaaaatgca
gctttcctgggagaactgaaggaaaagaatgaacaggcttttgaagaagtgttccaaaat
gcaaactttaacacctacgagttcaggatccgagtgaaactggagacttacaacgacgaa
tctcgtattaaggccacagcaatggacgtcaaacccgtgaactacagagaatacagcaag
aggctgattgccaacatcaggagaaatgctcagctggggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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