KEGG   Cajanus cajan (pigeon pea): 109817662
Entry
109817662         CDS       T04868                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03013  Nucleocytoplasmic transport
ccaj03015  mRNA surveillance pathway
ccaj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109817662
  09122 Translation
   03013 Nucleocytoplasmic transport
    109817662
   03015 mRNA surveillance pathway
    109817662
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109817662
   03041 Spliceosome [BR:ccaj03041]
    109817662
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     109817662
Spliceosome [BR:ccaj03041]
 Complex C
  Other components
   EJC/TREX
    109817662
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109817662
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 109817662
NCBI-ProteinID: XP_020238572
Position
Unknown
AA seq 427 aa
MGETKDEAYEEELLDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALIL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
TREKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgggagaaacaaaggacgaagcatacgaggaagagcttctcgactacgaggaggaagaa
gacaaggcccccgattccgtcggagccaaagtcaacggcgaagctaccaagaagggatat
gttggaattcacagctcaggatttagagactttcttttgaagccggagctgcttcgcgct
attgtggactcgggttttgagcatccttccgaagtgcaacacgagtgcatacctcaagct
attctcggaatggatgttatttgtcaagccaagtctggaatgggaaagactgctgttttt
gttctctcgactttgcagcagattgatcctgttccaggccaagtttctgcacttattctg
tgtcatacaagagaattggcatatcagatatgccatgagtttgaaaggtttagcacctac
ttacccgatctcaaggttgctgtcttttatggaggggtcaacatcaaagttcacaaggat
ttgctgaaaaatgaatgtcctcatattgttgttggaacaccggggagaatacttgcattg
actagggagaaggacctttctttaaagaatgttcgacatttcatattggatgaatgtgac
aagatgctggaatccctggatatgaggaaagatgttcaagacattttcaagatgactcct
catgacaagcaagttatgatgttctctgccacgctcagcaaggaaatacgtccagtctgc
aagaaatttatgcaagatcctatggaaatttatgttgacgatgaggccaagctgaccctt
catggactagtgcagcactacatcaaattaaaagaggaggagaaaaaccgaaagttgaat
gatcttctggatgcactggattttaaccaggttgttatctttgtaaaaagtgttagtaga
gcagccgaactggacaaactacttgtggagtgcaactttccatctatatgtattcactcg
ggcatgtcccaggaagagaggttaaagcgttataaaggtttcaaggaggggcatacgagg
attcttgttgcaacagatttggttggaagagggattgacattgaacgtgtcaatattgtt
ataaactatgatatgcctgattctgcagacacatacttgcacagggttggccgagctgga
agatttggcaccaaaggccttgcaatcacctttgtttcgtgttctactgatgtcgatgtt
ctcaacaatgttcaatcaaggtttgaggtggatataaaacagctccctgagcagatcgat
acctctacctatatgccatcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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