KEGG   Ceratina calcarata (carpenter bee): 108630676
Entry
108630676         CDS       T06061                                 
Name
(RefSeq) ATP-dependent RNA helicase WM6
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
ccal  Ceratina calcarata (carpenter bee)
Pathway
ccal03013  Nucleocytoplasmic transport
ccal03015  mRNA surveillance pathway
ccal03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108630676
  09122 Translation
   03013 Nucleocytoplasmic transport
    108630676
   03015 mRNA surveillance pathway
    108630676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccal03019]
    108630676
   03041 Spliceosome [BR:ccal03041]
    108630676
Enzymes [BR:ccal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     108630676
Messenger RNA biogenesis [BR:ccal03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108630676
Spliceosome [BR:ccal03041]
 Complex C
  Other components
   EJC/TREX
    108630676
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108630676
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 108630676
NCBI-ProteinID: XP_017889585
Position
Unknown
AA seq 425 aa
MADNDDLLDYEDEEQTEQLVDGSRDAPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIIDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENNQVYVLVMCHT
RELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALVRN
KKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMA
LAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLAS
YIEGR
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggcggataatgatgaccttttggattacgaagatgaggaacagaccgagcagttggtc
gatggaagcagagatgctcctgccaaaaaagaagtaaagggcacatatgtatctattcac
agcagtggatttcgggattttcttcttaaacctgaaatactacgtgcgatcattgactgc
ggttttgaacacccttccgaagtgcaacacgaatgtattcctcaagcagtacttggtatg
gacatcttgtgccaggcaaagtctggtatgggaaagacggcggtgttcgtattagcaaca
ctgcagcagttagaattaacggaaaacaatcaagtttatgttctcgtcatgtgccacacg
agagaacttgctttccaaatcagcaaggaatatgaaagattcagcaaatacatgcctcat
gtgaaagtgggagtatttttcggtggtctaccgattcagaaagatgaagaagtattgaag
aacacgtgtcctcatatcgttgtgggtacaccggggcgcattcttgctctcgtccgaaat
aagaaattgaacctgaaacatttgaaacactttatactcgacgagtgtgacaaaatgctc
gaactattagacatgcgcagggacgtacaggaaatatttagaagcactccgcacggcaaa
caagtgatgatgttcagcgctacattgtccaaggaaatacgtcccgtctgcaaaaagttt
atgcaagatcccatggaagtctatgtggacgatgaggcgaagctcacgttgcacggtcta
caacagcattacgtgaaactgaaagagaacgaaaagaacaagaagctgtttgaattactc
gatgtacttgaattcaatcaggttgttatctttgtaaaatctgtacaaagatgtatggcg
ttggcacaactcctgactgaacagaatttcccggcgatcggtatacacagaggtatgacc
caggaggaacgattgtcgaggtaccaacagttcaaagatttccaaaaacgaatcctcgta
gccacaaatttatttggacgaggtatggacatcgaacgtgtaaacatagtatttaactac
gacatgccggaagattcggatacgtatctgcatcgagtggctagagccggtcgttttggc
actaaggggctcgcaattaccttagtcagcgacgaaagcgatgccaagattctgaacgac
gttcaagaacgatttgacgttaacattacggaattaccggacgagatagatttagcttcg
tacatcgaaggacgataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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