KEGG   Castor canadensis (American beaver): 109696789
Entry
109696789         CDS       T04791                                 
Symbol
Lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
ccan  Castor canadensis (American beaver)
Pathway
ccan03018  RNA degradation
ccan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109696789 (Lsm5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109696789 (Lsm5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccan03019]
    109696789 (Lsm5)
   03041 Spliceosome [BR:ccan03041]
    109696789 (Lsm5)
Messenger RNA biogenesis [BR:ccan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109696789 (Lsm5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109696789 (Lsm5)
Spliceosome [BR:ccan03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109696789 (Lsm5)
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 109696789
NCBI-ProteinID: XP_020035592
UniProt: A0A250Y8S8
Position
Unknown
AA seq 91 aa
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggctaacgctaccaccaacccttcgcagctactgccactagagttggtggataaa
tgtataggatcaagaattcacatcgtgatgaagagtgataaggaaattgttggtacactt
ctaggatttgatgactttgtcaatatggtactggaagatgtcactgagtttgaaatcaca
ccagaaggaagaaggattaccaaattagatcagattttgcttaatggaaataatataaca
atgctggttcctggaggagaaggacctgaagtatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (50)   

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