KEGG   Castor canadensis (American beaver): 109699136
Entry
109699136         CDS       T04791                                 
Symbol
Psmc1
Name
(RefSeq) 26S protease regulatory subunit 4 isoform X1
  KO
K03062  26S proteasome regulatory subunit T2
Organism
ccan  Castor canadensis (American beaver)
Pathway
ccan03050  Proteasome
ccan05010  Alzheimer disease
ccan05012  Parkinson disease
ccan05014  Amyotrophic lateral sclerosis
ccan05016  Huntington disease
ccan05017  Spinocerebellar ataxia
ccan05020  Prion disease
ccan05022  Pathways of neurodegeneration - multiple diseases
ccan05165  Human papillomavirus infection
ccan05169  Epstein-Barr virus infection
ccan05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ccan00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    109699136 (Psmc1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    109699136 (Psmc1)
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    109699136 (Psmc1)
   05165 Human papillomavirus infection
    109699136 (Psmc1)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    109699136 (Psmc1)
   05012 Parkinson disease
    109699136 (Psmc1)
   05014 Amyotrophic lateral sclerosis
    109699136 (Psmc1)
   05016 Huntington disease
    109699136 (Psmc1)
   05017 Spinocerebellar ataxia
    109699136 (Psmc1)
   05020 Prion disease
    109699136 (Psmc1)
   05022 Pathways of neurodegeneration - multiple diseases
    109699136 (Psmc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:ccan03051]
    109699136 (Psmc1)
Proteasome [BR:ccan03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    ATPase subunits
     109699136 (Psmc1)
SSDB
Motif
Pfam: AAA Prot_ATP_ID_OB_C AAA_lid_3 AAA_2 AAA_22 nSTAND3 DUF815 AAA_5 RuvB_N AAA_16 AAA_25 AAA_28 AAA_14 RNA_helicase AAA_3 ATPase IstB_IS21 TIP49 AAA_11 AAA_18 Mg_chelatase Prot_ATP_ID_OB_N AAA_7 AAA_33 Parvo_NS1 NB-ARC PhoH NACHT AAA_24 AAA_30 TsaE
Other DBs
NCBI-GeneID: 109699136
NCBI-ProteinID: XP_020039297
UniProt: A0A250Y107
Position
Unknown
AA seq 440 aa
MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRL
KLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH
AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP
QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA
NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG
GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT
KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK
KSKENVLYKKQEGTPEGLYL
NT seq 1323 nt   +upstreamnt  +downstreamnt
atgggtcaaagtcagagtggtggtcatggtcctggaggtggcaaaaaggatgacaaggac
aagaaaaagaaatatgagcctcccgtaccaactagagtggggaaaaagaagaagaaaaca
aagggaccagatgctgccagcaaactgccactagtgacacctcacactcagtgccgctta
aaattactgaagttagagagaattaaagactatcttctcatggaggaggagttcattaga
aatcaggagcaaatgaagcccttagaagaaaaacaagaggaggaaagatcaaaggtggat
gatctgaggggaacaccaatgtccgtaggaaccttggaagagatcattgatgacaatcat
gccattgtgtctacatctgtgggctccgagcactatgtcagtatcctttcatttgtggac
aaggacttgctggaaccaggctgctcagtcttgcttaaccacaaggtacacgctgtgata
ggggtgctaatggatgacacagatcccctggtcacggtgatgaaggtggaaaaggccccc
caagagacctatgcagatattggagggttggacaaccagatccaggaaattaaggagtct
gtggagcttcctctcacccatcctgaatattatgaggagatgggtataaagccccctaag
ggggtcattctctacggcccacctggcacaggtaaaaccttgttagccaaagcagtagca
aaccaaacttcagccactttcttgagagtggttggctcagaacttattcagaagtaccta
ggcgatgggcccaaacttgtacgggaattgtttcgagttgctgaagaacacgcaccctcc
attgtgtttattgatgaaatcgatgccattgggaccaaaagatatgattcaaattctgga
ggtgagagagaaattcagcgaacaatgttggaactgttgaaccagttggatggatttgat
tcaaggggagatgtgaaagttatcatggccacaaaccgaatagaaactttggatccagca
ctgatcagaccaggccgcatcgacaggaaaatcgagttccccctgcctgatgaaaagact
aagaagcgcatctttcagattcacacaagcaggatgacactggctgatgacgtaacacta
gatgacttgatcatggcaaaggatgacctctccggagctgacatcaaggcaatctgtaca
gaagctggtctgatggccttgagagaacgcagaatgaaagtaacaaatgaagacttcaaa
aaatctaaagaaaatgttctctataaaaaacaagaaggcacccctgagggactctacctc
tag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (11)   
   KEGG PATHWAY (11)   
Genome (1)   
   KEGG GENOME (1)   
Gene (89)   
   KEGG ORTHOLOGY (1)   
   RefGene (85)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (31)   
   Pfam (31)   
All databases (141)   

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