KEGG   Clavibacter capsici: AES38_10105
Entry
AES38_10105       CDS       T05227                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ccap  Clavibacter capsici
Pathway
ccap03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AES38_10105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccap03400]
    AES38_10105
Enzymes [BR:ccap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AES38_10105
DNA repair and recombination proteins [BR:ccap03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AES38_10105
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: ALD13223
UniProt: A0AA86GCT7
Position
2142153..2144654
AA seq 833 aa
MAGAKQQVEVEGRRITLTNLDKVLYPATGTTKGDVIAYYAAIAPHMLPHLRDRPVTRKRW
VDGVGTDDEPGKMFFQKDLDAHTPEWVQRRAIQHRDHANDYPLVADVATLTWLGQIAALE
LHVPQWRFGRTGDVRRPDRLVLDFDPGPGAGLPECVEVAGAARAILRDMGLEPYPVTSGS
KGIHLYAALDGSHDADAISEVAHELARALEADHPDLVVSDMRKALRHGKVLVDWSQNNPA
KTTVAPYSLRGRSRPTVAVPRTWRELASPTLRHLEMDEVVARMRRRQDPLAPVEEGHRES
LEPTPERLAGFARKEPADDRLATYRSKRDAAKTSEPVPAESPAPSEGRSFVIQEHHARAL
HWDFRLEHDGVLVSWALPKGVPTEHGTDHLAVQTEDHPVEYGAFEGTIPAGEYGGGEVTI
WDAGTYELEKWRDGKEVIATLHGRGSGTGIDGPRRYALIHTGGHGKADANWLIHLMEPAD
APAKAHARPARPAALERAGGRTRVGARRRGGAASAPAPMLATAATGAGLDPDEEWAVEMK
WDGYRAIAVVADGRATITSRNGVDLTPAFPELAELPDSLDVDAAVLDGEIVVLGDGGRPD
FGLLQTRLGLTGEKDVARARKAAPVHLMLFDALAIGDRVLVEEPYRERRAALLDAVRSPG
RGRIQVPPAFDGDLDGALATSRELGLEGVVAKRVDAPYESGRRSSAWLKVKHHRAQEVVV
GGWRPGSGSRASGVGSLLVGVPGPDGLDYAGRVGTGFTERDLADALRRFRPLARKTSPFA
DVPAADARDAHWITPRLVGEVEFAEWTSTGRLRQASWRGWRHDKSPDEVVRED
NT seq 2502 nt   +upstreamnt  +downstreamnt
atggcgggcgcgaagcagcaggtggaggtcgaggggcggcggatcacgctgacgaacctc
gacaaggtgctgtacccggccaccggcacgaccaagggcgacgtgatcgcgtactacgcg
gccatcgcgccgcacatgctgccgcacctccgcgaccggccggtgacccgcaagcgctgg
gtcgacggcgtcgggaccgatgacgagccggggaagatgttcttccagaaggacctcgac
gcccacacgccggagtgggtccagcggcgggcgatccagcaccgcgaccacgcgaacgac
taccccctcgtcgccgacgtcgcgacgctcacctggctcgggcagatcgcggcgctcgag
ctgcacgtgccgcagtggcgcttcggccgcacgggcgacgtgcgtcgccccgaccgcctc
gtgctcgacttcgacccgggacccggcgccggacttcccgagtgcgtcgaggtcgcgggg
gcggcccgcgcgatcctccgcgacatgggcctcgagccctacccggtgacgagcggatcc
aaggggatccacctctacgcggccctcgacggcagccacgacgcggacgccatctccgag
gtggcgcacgagctcgcccgcgcgctcgaggccgaccaccccgacctcgtcgtgagcgac
atgaggaaggcgttgcggcacggcaaggtgctcgtcgactggagccagaacaacccggcc
aagacgacggtggcgccgtactcgctgcgcggccgctcccggccgaccgtcgcggtgccg
cgcacgtggcgcgagctcgcgtcgccgaccctccggcacctggagatggacgaggtcgtc
gcgcggatgcggaggcgccaggatccgctcgcccccgtcgaggagggacaccgcgagagc
ctggagccgacgcccgagcggctcgcgggcttcgcacggaaggagccggccgacgaccgc
ctcgccacctaccgctcgaagcgcgacgcggccaagacgagcgagcccgtgcccgcggag
tccccggcgccgtcggagggccgctccttcgtgatccaggagcaccacgcccgcgcgctg
cactgggacttccggctggagcacgacggcgtgctcgtgagctgggccctccccaagggc
gtgcccaccgagcacggcacggaccacctcgcggtgcagaccgaggaccacccggtcgag
tacggcgcgttcgagggcacgatccccgcgggcgagtacggcggcggcgaggtgacgatc
tgggacgcgggcacctacgagctggagaagtggcgcgacggcaaggaggtcatcgcgacg
ctgcacggtcgaggctccggcaccggcatcgacgggccccggcggtacgcgctcatccac
acgggcgggcacggcaaggccgacgcgaactggctgatccacctgatggagcccgccgac
gcccccgcgaaggcgcacgcgaggcccgcacgccccgccgccctggagagggcgggaggg
cgcacgcgcgtcggcgcgcgacggaggggcggcgccgcatccgcccccgcgcccatgctc
gcgacggccgcgaccggcgccggcctcgaccccgacgaggagtgggccgtcgagatgaag
tgggacggctaccgcgcgatcgccgtcgtcgccgacggccgcgcgaccatcacgagccgc
aacggcgtcgacctcacgcccgccttccccgagctcgccgagctgcccgactccctcgac
gtcgacgcggccgtgctcgacggcgagatcgtcgtgctcggcgacggcggccgcccggac
ttcggcctcctgcagacgcgcctcgggctcaccggcgagaaggacgtcgcgcgcgcccgg
aaggccgcgcccgtgcacctcatgctcttcgacgccctcgcgatcggcgaccgcgtgctc
gtggaggagccgtaccgggagcgccgggccgcgctcctcgacgccgtccgctcgccgggc
cgcggccggatccaggtcccgcccgccttcgacggcgacctcgacggggcgctcgccacc
agccgcgagctcggcctcgagggcgtcgtcgccaagcgcgtcgacgcgccctacgagtcg
ggccgccgatccagcgcgtggctgaaggtcaagcaccaccgggcgcaggaggtcgtggtc
ggcggctggcgacccggatccggcagccgcgcatccggcgtcggctcgctgctcgtcggc
gtccccggccccgacggcctggattacgcgggccgcgtcggcacgggcttcaccgagcgc
gacctcgccgacgccctccgccgcttccgcccgctcgcgcggaagacgagccccttcgcc
gacgtgccggccgccgacgcccgcgacgcgcactggatcacgccccgcctcgtcggcgag
gtcgagttcgccgagtggacctccacggggcgcctccgccaggcgtcctggcgcggctgg
cggcacgacaagtcgcccgacgaggtcgtgcgcgaggactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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