KEGG T05134: 109050662

Cyprinus carpio (common carp): 109050662

Entry

109050662         CDS       T05134

Name

(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like

K12604

CCR4-NOT transcription complex subunit 1

Organism

ccar Cyprinus carpio (common carp)

Pathway

ccar03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:ccar00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109050662
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109050662
Messenger RNA biogenesis [BR:ccar03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109050662
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     109050662

SSDB

Motif

Pfam:

Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT Med13_C

Other DBs

NCBI-GeneID:

109050662

NCBI-ProteinID:

XP_018923786

Position

49:5341194..5360066

AA seq 2371 aa
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVCLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASPDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQLVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVF
CFADYPCHTVALTSDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPI
KHCPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPXSAIILHYAWHGQGQSPSIRQL
IMHSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKL
DKWLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQS
CAGSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLTAM
GSLSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGTTPFSSQLQ
GTLSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEID
DEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQY
PDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRL
KDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQ
TPKAPQPAQASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQT
ERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNF
HSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLA
KNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNV
LAELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKP
PEEMLPIITTVAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHININVNIPLLQA
HPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAAHHMM
RNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCELACC
FIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKVGGVD
PKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDLEQHLH
AIPPALAMNPQTQAIRSLLEAVVLARNSRDGIAALGLLQKAVEGLLDATSGADTDLLLSY
RECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDL
HLAQSMENGLNYMAVAFAMQLVKILLVDERSGSHITEADLFHTIETLMRTNAHSRANAPE
GLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYH
SAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQLPTTSP
AIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEF
QQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHR
IFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHD
FPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRIL
TNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQ
AIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFS
CTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHC
APEIEKLFQSVAQCCMGQKQAQQVMEGTGAS

NT seq 7116 nt +upstreamnt +downstreamnt
atgaatcttgattcgctctcgctggctttgtctcagatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacaatttctgatccaggagtgtgtgtgt
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcagaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcaatttgtgaagcagaagctccctgatctcctccgctcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctgctctcccatcttctgttcggtcagaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacattgtgcagagatttcccgcaggagcgctgtcct
gtggtgcttgcaccactgttgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagaattaaataagaccatgatggagagttcacttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcctgatgagtgcaggaacataatcctgcagtat
ggtgtgcgagaggtgaccgccagtcaggtggccagagtgttgggcatgatggcccgcact
cactccgggctgtccgacggcatcggcttacaatccatctcaaatccagtgggcagtggg
atctggagtgatgggaaggacaagagtgacggctctcaggctcacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaagaggtgacctat
gagctggaccacccaggcttcctgatccgggacagtaaggggcttcagttagtggtctat
gggatccagaggggtctgggaatggaggtgttcccagtggatctcatatacagaccatgg
aagcatgcagaaggacagctgtcgttcattcaacactcgctgatgagtcctgacgtcttc
tgctttgctgactatccctgtcatactgttgccttgacatccgacatcctgaaggcccca
cctgaggatgacaacagagaaatagccacatggaagagcttggacctagtggagagcctc
ttgcgcctctcagaagttgggcattatgaacaggtgaagcagctcttcagcttccccatc
aaacactgcccggacatgctagtgctggcacttctgcagatcagcacctcctggcacacc
ctgcgtcatgagctcatctctaccctcatgcccatcttcctgggcaaccacccanactct
gccatcatcttgcactatgcctggcatggacagggccagtccccctccatccgccagctg
atcatgcactctatggccgagtggtacatgagaggagagcagtacgaccaggccaagcta
tctcgcatcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtact
ccatttgcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaactt
gacaaatggctcactgacaaaatacgagagcatggggaaccattcatccaggcatgtgtc
acgttcctgaagagacgctgtccctctatcatgggtggtttggcgccagagaaagaccag
ccaaaaagtgctcaacttcctcctgaaacactggctaccatgcttgcatgtctgcagtct
tgtgctgggagtgtgtctcaagagctatcagagacaatcttgactatggtggccaactgt
agcaatgtgatgaacaaggcccggcagccgccaccaggagtcttaccaaagggacgagct
cccagcaccagcagcttagatgctatctcacctgtccagatggaccctctcactgcaatg
ggctctttgagtctaggtgtctcgtccacctcccacaccccgagcatgcaaggattcccc
agcctgcagggctctgccttcagtaacccccaatccccagccaaagccttctcaaacctg
cccaacccgaaccccagcacagctttcccaggaaccacccccttctcttctcagctccaa
gggactctgagcacaagcttgactgggattggctcaggtttgggcatgcccgccgtcagc
agcgaccccttcggcactaggaagatgagcacaccggggctgaacccgcccaccttccag
cagactgacctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagat
gatgaggcaaatagctacttccagcgcatctacaaccatcccccgcacccaacaatgtcc
gtggatgaggtgctggaaatgctgcagagatttaaggactcaaacatcaagcgagaacgg
gaggtttttaactgcatgctgaggaatctgttcgaggagtaccgattcttccctcagtat
ccagataaagaactgcacatcaccgcttgcctctttggggggatcattgagaagggcctg
gtcacgtacatggcgctgggcttggctttacgatatgtcctggaagccttacgcaaacct
ttcggatcaaagatgtattactttgggatcgctgcactagatagatttaaaaatagactg
aaggactatccccagtactgtcagcacttggcatcaatagcccatttcctgcagtttcca
caccatttacaagagtatatagagtatggccagcagtccagagaccctcctgtgaagatg
caaggctccattactacccctggcagcctagctttagcccaggctcaagctcagtctcag
acccccaaagccccacaacctgcccaggccagcaccttagtgaccacagccaccacaacc
accaccgctgccaaaaccacaaccatcacgagacctacagctgttggaccgaagaaagat
gtgccaccttcaatcaacaccacaaacattgacaccttgttagtggctacagaccagact
gaaaggatcgttgagcccccagagaacgttcaggagaagattgcgttcatcttcaacaac
ttgtcccaatcaaacatgacccaaaaggtggaggagctgaaagagactgtgaaagaagaa
ttcatgccctgggtctctcagtacctggttatgaagcgtgtcagcattgagcctaacttc
cacagcctgtattccaatttcctggacacactgaaaaacccagagtttgttaagatggtt
ctcaatgagacgtacagaaacatcaaggtccttcttacctctgataaggcagctgctaac
ttctcagatcgatccctgctgaagaatttgggtcactggcttggaatgatcaccctagct
aaaaacaaacccatcctgtacacagacctggagctgaaatctctcttgctagaggcttat
gtgaaaggccaacaggagttactgtatgtcgtcccctttgtggccaaagtcttggaatca
agtctgcggagtgtgatcttcagaccgcagaacccttggaccatgggcatcatgaatgtt
ctggctgagctccaccaggaacatgacttaaagcttaacctcaagtttgagattgaggtg
ctctgcaagaatctgtctttggacatcagtgagctgaaacccggaaaccttctgagagac
aaagagaagctgaagaacttggaggagcagctctctgcaccaaagaaagagaccaagcct
cctgaagagatgcttcctataattacaacagttgctccctcaactccggccaccaccaca
acctgtacggccactgggccacccacaccacagttcagctaccatgacatcaatgtgtac
gccctggctggcctggccccacacatcaacatcaatgttaacatcccactactgcaggcc
caccctcagctgaaacagtgtgtaagaccagcaattgagcgtgctgtacaggaactggtg
cacccagtggtggaccgatccatcaagatcgccatgaccacctgtgagcaaatagtcagg
aaggacttcgcacttgactctgaggagtctcacatgcgtgtggccgcccaccacatgatg
cgtaacctgactgccggtatggccatgatcacctgcagagagccgctgctcatgagcatc
gccaccaacctgaagaacagctttgctgcagctcttagggctcccacaccccagcagaga
gagatgatggaagaggcggctgctcgcatcgcacaagacaactgtgagcttgcttgttgc
tttatccagaagacagcagtggagaaagctggacctgagatggacaagagactagcaact
gaattcgagctgaggaaacacgctcgccaagaaggccgtcgctactgtgaccccatggtg
ctcacctatcaggctgagcgcatgccagagcaaatcagactgaaggtcggtggagtagat
cctaaacagctggctgtttatgaggagttcgcccgaaatgttccaggcttcctacccagt
aacgacctgtctcagcccactggtttccttgcccaaccaatgaagcaacaggcatggccc
actgatgatgtagctcacatctacgataagtgcatttcagacctggagcagcacctgcac
gcaattccacctgcgctggccatgaacccgcagacccaggccatacgcagccttctggag
gccgttgtcttggctaggaactcccgtgatggcatcgctgccctgggccttttgcaaaag
gctgtggagggtctgcttgatgccaccagtggtgctgatactgatctgctgctgagctac
agggagtgccatctgctagtgctgaaagccctacaggatggtcgcgcctacggcccacag
tggtgcaacaaacaaatcaccagatgcctgattgagtgcagagatgaatacaagtacaac
gttgaggccgtggagctcctcatcagaaaccacctggtcaacatgcagcagtatgactta
cacctggctcagtccatggagaacgggctcaactacatggccgtggcattcgccatgcag
ctggtgaagatcctgctggttgacgaacgcagcgggagtcacatcaccgaagcggatctc
ttccacaccattgagacgctgatgaggaccaacgctcactccagagccaatgctcctgaa
ggtttgccccagctgatggatgttgtccgctccaactatgaggccatgatcgatcgtcac
catggtgggccgaacttcatgatgcactctgggatttctcaagcctctgaatatgatgac
ccaccaggccttagagagaaggcagagtacctgctgagagaatgggtcaacttgtaccac
tcggcagctgcaggaagagacagcaccaaggctttctctgcgtttgttggccagatgcac
cagcagggcatcctgaagactgatgacctgatcactcgcttcttccggctgtgcaccgaa
atgtgtgtggagatcagttaccgtgctcaagctgaacagcagcttccaaccaccagccct
gctattatcagggccaagtgctaccataacctggacgcttttgttcggctcattgcgctt
cttgtcaaacactccggagaggccaccaacacagtcaccaaaatcaacctgctcaacaag
gttttaggcattgtggtgggtgtactgatccaggatcacgatgtgaggcagacagagttc
cagcagcttccgtaccacagaatcttcatcatgctcctgctggagctaaacgcaccagag
catgtgctggagaccatcaactttcagacgctcactgccttctgcaataccttccacatc
ctgaggccgactaaagcacctggttttgtctatgcttggctggagctcatctcgcaccgt
atcttcattgccaggatgcttgcacataccccacaacagaagggttggccaatgtatgcc
cagctgctgatagacttgttcaaatatcttgcacccttcctaaggaatgttgaactcaac
aaacctatgcaaattctctacaagggaacacttcgtgtactgcttgtcctgctacatgac
tttccagaattcctgtgcgactaccattatggcttctgcgacgtcatcccgcctaactgc
atccagctgaggaacctgatcctgagtgccttcccccgcaacatgaggcttccagacccc
ttcacccctaatctgaaggtggatatgctgagtgagatcaacattgctccccgcatcctc
acgaacttcaccggtgtgatgccgtcccagtttaagaaggatcttgactcttacctcaag
acgcgttctcctgtcacctttctttctgagctgcgcagcaacctgcaggtgtccaacgag
cccggcaaccgctacaacattcagctaatcaatgctctggtgctgtacgttggaacccag
gccattgcccacatccacaacaagggcagcactccctccatgagcaccatcactcactcg
gctcacatggacatcttccagaaccttgcagtcgatcttgacactgagggccgctatctg
ttcctgaatgcgatagccaatcagctgcgttatccaaacagccacacacactactttagc
tgtaccatgctgtatctgtttgctgaggccaacgctgaagccattcaagagcagatcacc
agggtcctgctggagaggctgattgtgaacaggccgcacccgtggggtctgctcatcacc
ttcattgagctgatcaagaatcctgcctttaagttctggagccatgattttgtgcactgt
gcaccagagatcgagaagttgttccagtcggtggctcagtgctgtatggggcagaagcaa
gcccagcaggtgatggagggaacaggtgccagttag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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