KEGG   Cyprinus carpio (common carp): 109055785
Entry
109055785         CDS       T05134                                 
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03015  mRNA surveillance pathway
ccar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109055785
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109055785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109055785
   03041 Spliceosome [BR:ccar03041]
    109055785
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     109055785
   mRNA cycle factors
    Stress granule specific factors
     109055785
Spliceosome [BR:ccar03041]
 Complex C
  Other components
   Complex C specific factors
    109055785
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 YflT
Other DBs
NCBI-GeneID: 109055785
NCBI-ProteinID: XP_018928514
UniProt: A0A8C2DK55 A0A9Q9V0U3
Position
Unknown
AA seq 634 aa
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGSAMSIRVMTDENGKSRGFGFVSFER
HEDAQRAVDEMNGKELNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLTQLRPSPRWATQGVRPQHFQNMPGTMRPSAPRPQSFNTMRPASQVPRMMSTQ
RVAAQTMGPRPSTAAAAASAPPVRGVPQYKYTPSVRSPQQHMNTQPQVTMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSTGVPSV
NT seq 1905 nt   +upstreamnt  +downstreamnt
atgaaccccagcgctcccagttaccccatggcctccctgtatgttggagacctgcaccag
gacgtgactgaagccatgctctacgagaagttcagcccggccggtgccatcctgtccatc
cgggtgtgcagggacatgatcacgcgccggtcgctgggctatgcctatgtcaactttcag
cagcctgcagacgctgaacgagctctagacacaatgaactttgacgtgatcaagggtaga
cctgtccgcatcatgtggtctcagcgcgacccctcgctgaggaagagtggcgttggaaac
atcttcatcaagaacctggataagtctattgataataaagcactttatgataccttctct
gcatttggcaacatcctgtcctgcaaggtggtttgtgacgagaatggctcaaagggctac
ggctttgtgcactttgagacccaggaggccgctgaaagagccattgagaaaatgaacggc
atgttgctgaatgacagaaaagtgtttgtagggcgcttcaaatctcgcaaggagagggag
gctgagctcggcgcaagagccaaagaattcaccaacgtgtacatcaaaaactttggggaa
gacatggatgatgacaaactcaaggacatcttcagcaaatatggttctgccatgagcatc
cgtgtcatgactgatgaaaatggaaagtccagaggctttggattcgtgagttttgagagg
cacgaagacgcccagagggctgtggatgagatgaacggcaaagaactgaacgggaagctc
atctatgtgggtcgtgctcagaagaaagtggagcggcaaactgagctcaagcgcaaattt
gaacagatgaagcaggaccgcatgactcgctaccagggtgtcaatctgtacgtgaagaac
ttggatgatggtattgatgacgagcgtcttcgtaaagagttctctcccttcggtacaatc
accagtgccaaggtcatgatggacggtggtcgcagtaaaggcttcgggtttgtctgtttc
tcttcccctgaggaagcaactaaagccgtgactgagatgaatggccgtattgtggccact
aagccactgtatgtggctcttgctcagcgcaaagaggaacggcaggcccatctcaccaac
cagtacatgcagaggatggccagtgtccgtgcagtgccaaaccccgttatcaacccctac
caacctgcacctccatcaggatacttcatggctgccattccacaggcccagaacagagct
gcgtattaccctaccagtcagctcactcagctcagacccagtccccgctgggccacacag
ggtgtccggcctcagcacttccagaacatgccaggcacaatgcggccatctgcccccaga
cctcagtccttcaacaccatgcgtcctgcatctcaggtgcctcgcatgatgtccacacag
cgtgttgctgctcagactatgggtccacgacccagcactgcagcggctgcagcttccgct
cctccagtgcgcggcgtaccgcagtacaaatacacccccagtgtccgcagcccccagcag
cacatgaacacacagcctcaggtgaccatgcagcagcctgctgtgcacgtgcaaggacag
gaaccgctcacggcctccatgctcgccgctgccccgccacaggagcagaagcagatgctg
ggtgagcgtctcttcccacttatccagaatatgcatcccagcctggctggcaagatcacc
ggtatgctgctggaaatcgacaactcagagctcctgcacatgctggagtctccagagtct
ctgcgctccaaggtcgatgaggcggtggccgtactccaggctcaccaggctaaagaggcc
gctcagaagaccgtgaccaactctactggcgtgccaagcgtctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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