KEGG   Cyprinus carpio (common carp): 109081892
Entry
109081892         CDS       T05134                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
  KO
K12646  ATP-dependent RNA helicase DDX58 [EC:3.6.4.13]
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar04622  RIG-I-like receptor signaling pathway
ccar04623  Cytosolic DNA-sensing pathway
ccar05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    109081892
   04623 Cytosolic DNA-sensing pathway
    109081892
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109081892
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:ccar04054]
    109081892
Pattern recognition receptors [BR:ccar04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   109081892
SSDB
Motif
Pfam: RIG-I_C CARD_2 DEAD ResIII Helicase_C SNF2-rel_dom PhoH AAA_19 ATP-synt_ab
Other DBs
NCBI-GeneID: 109081892
NCBI-ProteinID: XP_018952401
Position
Unknown
AA seq 752 aa
MYEMEKENLRRFSDYITKFLRPSVIKNFMTVYLDKEMVESILSTEMKSVTAAAQMLLDQM
CYLEEVGWFQAFLDILLASEYTGLHDAIKEWNFQELEQLNEHRRFLERIEPSITKHLKPS
ELIAHMSGCLKPRECEEIQAEESQRGRIAASEKLVASLLRSDKPNWFKLLKIALENCDLD
EARDMLETNGGAAAAKACEWDAEPEAMMTTVCFEFREEAETEDMLMSSNNSTSVAEEPGG
FTGKPERSGERKLGKYQKELTAAAVQGQNTIICAPTGCGKTIVALAISEYHLKQFPEKAK
IVFLATKVDVYEQQYKLFKEHFSSKDPNIRVTGMCGDMDYLSVRWLIEHHDIVVMTAQIL
VNALQSAEVPSLEILSLILFDECHNTTGKHPYNNIMTRYLDTKLTSSTHSLPQIVGLTAS
VGIGSFKNGLEAENNILQLCANLDTRVITTVTEHKDELKSYVHTPEKAFFEVQQCMSHPF
IRIIKNIMSNIEQLAQKTFNIESLSNIQNREYGSQKYEQWIVSVQKSCKVLQMKNKDEER
RICRELYNYTEHLRKYNDALIINEDARTKDALDYLDAFFDQVRNAGFDETERKLTALYDC
QRPQLLRLATEGEQNPKLDELKFILEEEYHNNDQTRTVMFVKTRALADAMKKWIDETDSL
KFLKPGVLIGKGRKSNFTGSGMTPNNQKGILESFKSSDQSKMLIATSVADEGIDIPQCNL
VLMYEYVGNVVKMVQVRGRGRAVGQSVVPDLQ
NT seq 2259 nt   +upstreamnt  +downstreamnt
atgtacgagatggaaaaggagaacctgcggcgctttagcgattatatcacgaagttttta
cgaccgtcagtcatcaagaacttcatgacggtatacctcgataaagagatggtggagagc
attctctctacagagatgaagtctgtgaccgcggctgcccagatgctgctggaccagatg
tgttatctagaggaagtgggctggtttcaagcctttctggacatcctgctcgcctcagag
tacaccgggctgcacgacgccataaaagagtggaacttccaggagttagagcagctgaac
gaacacaggagatttctcgagaggatcgaaccgtccatcaccaaacacttgaagcccagt
gagctgatcgcacacatgagcggctgtctgaagcccagagagtgtgaggagatccaggcc
gaggagagtcagcgcggccgtatagcagccagtgagaaactcgtggcgagtctcctgcgc
tcagacaaacccaactggtttaaactgctgaagatcgcgctggaaaactgtgacttagac
gaggctcgagacatgctggagacaaatggaggagctgcggccgcgaaggcctgcgaatgg
gacgcagagccggaagccatgatgacgaccgtgtgtttcgagttcagagaggaggccgag
actgaagacatgctgatgagcagcaacaacagcacgagcgtcgcagaggaacccggcggc
ttcacagggaagcctgagcgatcaggtgaacgcaagctgggaaaatatcagaaggagctg
accgctgctgccgtccagggccagaacaccatcatctgcgctcccacaggatgtggaaaa
actattgtggcgttggccatcagtgaatatcacctgaagcagtttcccgaaaaagcaaag
atcgtgtttttggcaaccaaggtcgatgtctatgaacagcagtacaaacttttcaaggag
catttttccagcaaggatcccaacatcagggtgacggggatgtgtggggatatggattat
ctgtccgtgcgctggctcatagagcatcatgatatcgtggtgatgacggctcagatcctg
gtgaacgcgctgcagagcgctgaggtgccgtctctggagatcctgtcgctcatcctgttc
gacgagtgtcacaacacgaccggaaaacacccctacaacaacatcatgacccgctacctg
gacaccaaactcaccagcagcacacactcactgccacagattgtgggcctgaccgcgtcg
gtcggcattggttcattcaagaatggactggaggcagagaacaacatcttacagctctgt
gccaacctggataccagggtcatcaccacggttaccgaacacaaggatgagctcaagtca
tacgtgcacacgcctgagaaagctttttttgaggttcaacagtgcatgagtcaccccttc
atcagaataatcaaaaacatcatgagtaacattgagcagctggcgcagaagaccttcaac
atcgagagcctgtcgaacatccagaaccgcgagtacggctcgcagaaatacgagcagtgg
atcgtttctgttcagaagagctgcaaagtcttacagatgaagaacaaagacgaggagaga
cgcatctgcagagaactctacaactacactgaacacctgcggaaatataacgatgctctg
atcattaatgaggacgcgcggactaaagatgcgctggattatctggacgcgttctttgat
caggtccggaacgccggcttcgacgagaccgagaggaaactcactgcgctctacgactgt
cagcggccgcagttactgcgtttggccactgagggggagcagaacccaaaactagatgag
ctgaaattcatcctggaggaagaataccacaataatgatcagacgcgcaccgtcatgttt
gttaagacacgtgccctcgccgacgccatgaagaaatggattgatgagactgattccctg
aagttcctgaagcctggagttctgataggaaaaggacggaaatccaactttactggatca
ggaatgactccgaacaatcagaaggggattctggagtcttttaagagctccgatcagagc
aagatgctcatcgccacatcggtcgctgatgaaggcatcgatatcccacagtgcaacttg
gttctgatgtatgaatatgtggggaacgtggtaaagatggtgcaagttcgaggtcgtggt
cgagcggtagggcagtccgttgttcctgatctccagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (24)   

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