KEGG   Cyprinus carpio (common carp): 109086302
Entry
109086302         CDS       T05134                                 
Name
(RefSeq) LOW QUALITY PROTEIN: probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03082  ATP-dependent chromatin remodeling
ccar03083  Polycomb repressive complex
ccar04110  Cell cycle
ccar04330  Notch signaling pathway
ccar04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    109086302
   03083 Polycomb repressive complex
    109086302
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    109086302
   04350 TGF-beta signaling pathway
    109086302
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    109086302
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccar03036]
    109086302
Enzymes [BR:ccar01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     109086302
Chromosome and associated proteins [BR:ccar03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     109086302
   HDAC complexes
    Sin3A-HDAC complex
     109086302
    BRAF-HDAC complex
     109086302
    REST complex
     109086302
    SHIP complex
     109086302
    MiDAC complex
     109086302
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     109086302
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    109086302
  Chromatin remodeling factors
   NuRD complex
    109086302
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 109086302
NCBI-ProteinID: XP_018956291
Position
9:complement(15949452..15954314)
AA seq 354 aa
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSWGFNLTIKGHAKCVEYIKSFNLPLLMLGGGGYTI
RNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYLEKIKQR
LFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPDKRISIRAHDKRIACDEEFSDSEDE
GQGGRRNAANYKKPKRVKTEEEKDGEEKKDVKEEEKASEEKMDTKGPKEELKTV
NT seq 1065 nt   +upstreamnt  +downstreamnt
atggcgctgagttctcaaggaacaaagaagaaagtttgctattattatgacggggatgtt
gggaattactactatggccagggtcatcccatgaaaccccacagaatccgcatgacccac
aacctcctgctcaactatgggctgtataggaaaatggaaatttatcggcctcataaagcc
aatggtgaagaaatgaccaagtatcacagtgacgattacatcaagttcctccgctccatc
cgcccagacaacatgtctgagtacagcaagcagatgcagagatttaatgtaggggaggat
tgtcctgtctttgatggcttatttgagttctgtcagctctcaacaggtggatctgttgct
ggggctgtgaaactcaacaaacagcagacagacattgccattaactgggcaggaggcctt
catcatgccaagaaatcttggggctttaacctcaccatcaaaggtcatgccaagtgtgtg
gagtacataaagagctttaacctgcccctgctcatgctgggaggtggaggctacaccatc
aggaacgtggcccgctgctggacctacgagacggctgtagcactggacagcaccattccc
aacgagctcccgtacaatgactactttgagtattttggacctgatttcaaacttcacatc
agcccctccaacatgaccaatcagaatacaaatgactatctggagaaaatcaaacagcgt
ctgtttgagaatctgcggatgttgcctcatgctccaggggttcagatgcaggcgatccca
gaggatgctgttcaggaagacagcggagatgaggaggatgaccctgacaaacgcatctcc
atccgtgcccacgacaagcggatagcctgcgacgaggagttctcagactctgaggacgaa
ggacagggcggccggagaaatgcagccaattacaagaagcctaaacgagtgaagactgaa
gaagagaaggatggagaagagaagaaagatgtcaaagaagaggagaaagcttcagaagaa
aaaatggacacaaaggggccaaaagaggaattaaaaacagtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

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