KEGG   Cyprinus carpio (common carp): 109090717
Entry
109090717         CDS       T05134                                 
Symbol
sympk
Name
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03015  mRNA surveillance pathway
ccar04530  Tight junction
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109090717 (sympk)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    109090717 (sympk)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccar03021]
    109090717 (sympk)
   03019 Messenger RNA biogenesis [BR:ccar03019]
    109090717 (sympk)
Transcription machinery [BR:ccar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     109090717 (sympk)
Messenger RNA biogenesis [BR:ccar03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     109090717 (sympk)
    U7-dependent histone pre-mRNA processing factors
     109090717 (sympk)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N PDS5 V-ATPase_H_C Adaptin_N Cohesin_HEAT SCD Rep_Org_C Cnd1
Other DBs
NCBI-GeneID: 109090717
NCBI-ProteinID: XP_018960095
UniProt: A0A9Q9VBN6
Position
10:complement(15981697..15998976)
AA seq 1247 aa
MMASGVGEQAHGSVASQFYSNEEETAFDMTTSEKVVELLNQAALISTEEKLIVLKQVQEL
IINKDPSLLDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDE
SVNVVKKAILTLTQLYKVALQWLVRIKSVSDMQEACWDMMTQIKEDVLALLDSDNDGVRT
HAIKFTESLIITLSPRTPDSDTPKKQEGDISLDKIPKDHTYIRYDTLCEEGKSALEQLLK
FMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNL
KLHLVSVLKHPSSVDFQGQISTLLLDLGMSQSEITRCTPATVQPRKRLHHEPYVEGKRIK
MDAPLAEDDEDKEEPAPVVTPKPSSSVGTQSAIDLTAEFLLPLLTPDNVANLVLISMVYL
PEVMPASFQATYTPVESAGTDAQIKHLARLMATQMTGAGLGPGLELCKARDEEVKEEDGG
AGESSSKDPLIIRKLSAVSLGQAISVVGAPAAYKSPITEEAPQIKKLPEPILPTSQPKAP
GASGRKKVFKLADVVQPFSEAQIEKLSNMAIKRILLSEKVIAQSGMSHVRVKLLARLVTQ
FEGGKKNDLLQFILEDMRGRSELAFSLLYHEYNEYLSQQPSGSLDSYEHCLYTLLSGLQE
KPEQRDGLFTKLVLEAPVITDSALEVIQRYCEDESRVYLGMSTLKELILKRPSRQYQYLN
VLLNLSSHEKEKVRSTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLFGAGED
TEVASPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMG
MSSPDLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVI
NGLEKNEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLIALHNIDSS
KCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGF
VMNILARLILKQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQLASVFERCPEMREPL
LQHVHSFTPHQQAHIPASIMAVLEANSRKPEPEPQPELHHPEIIEEREVPVPKHISMPAP
VSQAEPPAPTPVEFTEPPPAQQQQIPRREEVEEPMEQEEADHAALEVMSEDASQQVEVTE
EASQSNSISEKTDEPMEESAARPVDVADQPKEESEDVLPEAGESSVD
NT seq 3744 nt   +upstreamnt  +downstreamnt
atgatggcgtcaggtgtgggagaacaagcacatggtagcgtggcctcccagttctacagc
aatgaggaagaaacagcctttgacatgaccactagcgagaaggtggtggaactgctaaac
caggcggccctcatctctacagaggaaaagctcattgttctcaaacaggtgcaggagttg
attatcaacaaggacccttcattgcttgataattttctggatgaaatcatcgcatttcag
actgataaatcaattgaggtgcgaaagtttgtcatcggattcattgaggaggcttgtaaa
agagacaatgagctgcttctgaggctgattgccaacctgaacatgctgatgagagatgag
agtgtgaatgtggtgaagaaggccattctgacactcactcagctatacaaagtggcttta
cagtggctggtgcgcattaagagtgtctcggacatgcaggaggcatgctgggatatgatg
acccagataaaagaggatgttctggccttgctggattccgataacgatggggttcgcact
catgccatcaaattcacagagtccctcatcatcactctgtcaccacgtacacctgactct
gacacgcccaagaaacaggagggagacatcagcctggacaaaatccccaaagaccacaca
tatattcgatatgacaccttatgtgaggagggcaagtcggctctggagcagttgttgaag
tttatggtgcaccctgccatctccagcattaatctcaccactgcgctgggatcactggcc
acgctggccagacagcggcccatgttcatgtctgaggtggtgcaggcctatgagacgcta
catgctaacctgcccccgactctggctaagtctcaagtgagcagtgtgcgcaagaacctg
aagctgcacttggtctcggtgctgaagcaccccagcagcgtggacttccagggccagatt
tccactctgctgctggacctcggcatgtctcagagtgagatcacccgctgcacgccagcc
accgtacagccccgtaagagactccaccatgagccctacgtcgagggcaagaggatcaag
atggatgcccctctagcggaggatgatgaggataaagaagaaccagctccagtcgtcacc
ccaaaaccgtcctcctctgttggcacccagtcagccatcgatctcactgctgagttcctg
ttgcctctactgaccccagacaatgtggccaacctggtgctcatcagtatggtttacctg
cctgaagtgatgccggcctctttccaagccacctacacacctgtagaatcagccggcact
gatgcccagatcaaacatttagccaggctgatggccacacagatgactggggctggcctg
ggaccagggctggagctgtgtaaggctcgagatgaagaggtgaaggaggaagatggtgga
gcgggtgagtccagctccaaagaccctctcatcatccgcaagctgtctgctgtgtccctg
ggtcaagccatctcagtggtgggggcgccagcggcctacaagagccctatcactgaagag
gcacctcagatcaagaagcttccagagcccatactgcccacctcacagcccaaagctcct
ggggccagtggcagaaaaaaagtgtttaaattggccgacgtggtgcagccattttcagag
gctcagattgagaaactcagcaacatggccatcaagcgcatcctcctatcagaaaaggtc
attgcacagagtgggatgtctcatgtccgtgtgaagctgcttgcacggttggtgacccag
tttgagggtgggaagaaaaatgacttgttgcagtttatcttggaggatatgcggggcagg
agtgagctggccttttctctgctgtaccacgagtacaatgaatacctgagtcagcagccc
tccggctccctggacagctatgagcactgtctgtacacactgctgtccggcctgcaggag
aaacctgagcagagggatgggcttttcaccaagcttgtgttggaggctccagtcattacg
gactcagcactggaggtgattcagcgctactgtgaggatgagtctcgtgtttacctaggc
atgtccacattaaaggagctcatcctcaaacgcccatccagacagtaccagtacctcaac
gtccttctgaacctcagctctcatgaaaaagaaaaggtgcgctccactgccctcagcttc
atcaagcgcatgtatgagaaggaacatctgaaggactgcattgagaagttcgctctcacc
tacatgcagtttctggtccacccaaacccaccttctcttctgtttggagcaggagaggat
acagaggtggcgtctccctggacagaggaaacggtgcggcagtgcctttacctctatctc
tccctccttccactcaaccatcgtctggtgcatgagctggctgctgtctacaccgaggcc
atcgccgacatcaaacgcagtgtgctcagggtcattgaacagcctataagaggaatggga
atgagctctcctgacctgctgctcctggtggagaactgccctaaaggagcagagacgctg
gtcactcgctgtctgcatatactcactgataaagtgccgccatctcctgagctggtggag
agggtgagggatctttatcataagcgagtgccagatgttcgcttcctcattccagtcatc
aatggcctggagaagaacgaggtgatccaagctctacccaaactcatcaaactcaatcct
attgtggtgaaggaggtgttcaacagactgctgggcactcaacatagtgagggcagttcc
tccatgtctccgctcactcctggagagctcctcatcgccttacacaacattgactcttcc
aagtgtgacatgaagtcaatcatcaaagccactaacctgtgttttggggagaagaatgtg
tacacgtccgaggtgctggccgtggtgatgcagcagttgatggagcagacccctctcccc
atactgctgatgcgtacggtcatccagtccctcactatgtaccctcgcctggctggtttc
gtcatgaatattctagcccgactcatcctcaaacaggtgtggaaatatcctaaagtgtgg
gagggctttgtaaagtgctgccagcgcaccaaaccccagtcctacaacgttctcctccag
ctgcctccaccacaactggccagtgtgtttgagcgctgcccggagatgagggagcccctc
ctacagcacgttcactccttcacccctcaccaacaagcccacattccagcatctataatg
gctgttctggaggccaacagcaggaagccggaaccagaaccacaacctgaacttcatcat
ccagaaataatagaagagagagaggtgccagtaccaaagcatatatcaatgcctgcacca
gtatcacaagcagaacctccagccccgacaccggtcgagtttaccgaaccaccaccagca
caacaacagcagatccccaggagggaagaagtagaagaacccatggagcaggaagaggcg
gaccatgctgctctggaggtcatgtctgaagacgcatcacagcaggtggaggtgactgag
gaggcatcacagtccaactccatttcagagaagacagatgaacccatggaagagtcggct
gcgaggcctgtggacgtggctgaccagcccaaagaggagtctgaggatgtgcttccagaa
gcaggagaaagcagcgtggactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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