KEGG   Cynara cardunculus var. scolymus (artichoke): 112501911
Entry
112501911         CDS       T05604                                 
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1
  KO
K20827  RNA polymerase II-associated protein 2 [EC:3.1.3.16]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ccav01009]
    112501911
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccav03021]
    112501911
Enzymes [BR:ccav01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     112501911
Protein phosphatases and associated proteins [BR:ccav01009]
 HAD phosphatases
  Fcp/Scp phosphatases
   112501911
Transcription machinery [BR:ccav03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     112501911
SSDB
Motif
Pfam: RPAP2_Rtr1 UPF0731
Other DBs
NCBI-GeneID: 112501911
NCBI-ProteinID: XP_024961450
Position
LG 1:complement(9788228..9793857)
AA seq 657 aa
MSKTSSSSSPIAVKDVIHKLQLCLLEGIKSETHLLVAGSLLSKSDYHDVVTERSIAKMCG
YPLCPNSLPSPSSSMPPKKGRYHISLKEHKVYDLVETHMYCSTKCVVDSRAYAESLQHER
SLDLDTAKLDKVVRLFDGLTLKAEEVLGENGDFGMGNLSIKEKEEGSVGGGIVSMEEWIG
PSNAIEGYVPQHDRSAKNRTGSKLKDSKHKREEKSIFDEMNFMSTIITQDNGYSISKEPS
GQTKKTAGAMSKDSRKKMNHKGTDDGLTASADSSCNAQNVPETNLNKLSYVPSSACQNVV
DVNVTESVKARICGKEAQPSSSGLKSSLKSSGALRTNHSVTWADEKTDGAHNRTLCEFNG
IENEKETSKGFGMIDKSIDDDDDDDNVLRFASAEACAVALSQAADAVASGESDVCDAVSE
AGLLILPPPLDDNEITSEEIEGAATDPEPARLKWPIRTGIVESDFFDSGDSWFDSPPEEF
VVDLSPFATMFMSLFAWISSSTLAYLYGRDDSFHEEYASINGREYPRKIVLTDGRSSEIK
QTLAGCLSRALPGLVHDLRLRTPVSTIEYGMGCLLDTMSFLDPLPSLRMKQWQVFVLLFA
EALSVSRIPAIAPHLTDRRFFQKVFDDAQISMEEYEVLKDLMLPLGRVSQFATQSGG
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgtcaaagacatcatcatcttcatcaccaatagctgtaaaagatgtgatacacaagctg
caactatgtctactagaaggtatcaaatctgaaacccatttgttggtagctggctctttg
ctctccaagtcagattaccatgatgtggtcaccgaacgatcaattgctaaaatgtgtggt
tacccactttgccccaactcattgccttccccttcctcatcaatgcctccaaagaagggc
agataccatatttctttgaaagagcacaaagtttatgaccttgtagaaacacacatgtat
tgttcaacgaaatgcgtagttgacagtcgggcgtatgctgaaagtttgcagcatgaacgg
tccttggatcttgatacagccaaactggataaggtggtaaggttgtttgatggtttgact
ttgaaggcagaagaggttttgggggagaatggtgactttggaatgggtaatttgtcaatt
aaggagaaggaagaaggaagtgttggtgggggaattgtgtctatggaggaatggattggt
ccttcaaatgcaatcgagggctatgttccacagcacgaccgcagcgcaaaaaacaggaca
gggtctaaattgaaagattccaagcacaaaagggaagaaaagagtatctttgatgagatg
aatttcatgagtaccataattactcaagacaatggttatagcatatctaaagaaccttct
gggcaaacaaaaaaaactgctggtgctatgtcaaaggactctagaaagaaaatgaatcac
aagggaactgatgatggtttaaccgcatcagctgattcatcatgcaatgcacaaaacgta
cccgagaccaacttaaataaattaagctatgttccttccagcgcttgccaaaatgtggtc
gatgtaaatgttacggaaagtgtcaaggcacgtatttgtggtaaagaagctcaaccaagt
tctagtgggctgaaatcttctctgaaatcttcgggtgctttaaggacaaatcactctgtc
acttgggctgatgaaaaaactgatggtgcacataatcgaacattatgtgagttcaatggg
atagaaaatgaaaaggaaacaagcaaaggttttggcatgatagacaagagtattgacgat
gatgatgatgatgataatgtactccgatttgcatcagcagaagcctgtgcggtagcgttg
agccaggcagcagacgctgttgcttctggggaatctgatgtttgtgatgctgtttcagaa
gctggacttcttatactgccacctccccttgatgacaatgaaatcacatctgaggagatt
gagggtgccgccactgatccagaaccagcacgcttgaagtggcccataagaaccggtatt
gttgagtctgatttctttgattccggggattcttggtttgatagtccaccggaggagttt
gtcgtagatctatcaccatttgcgacgatgtttatgtctttgtttgcatggatttcctca
tctactttggcgtatctatatggacgtgatgatagttttcatgaagagtatgcatcaatt
aatgggagggagtatccacggaaaattgtattgacagatggtcggtcttcagaaataaag
caaactcttgcaggttgtctttctcgagccttgccaggacttgttcatgatctgagactt
cgaactccagtttctactatcgaatatgggatgggttgtttactcgacaccatgtcgttt
cttgatccacttccgtctctcagaatgaaacaatggcaggtgtttgttcttttgttcgct
gaagctctttccgtctcccggatccctgctatagccccacatttgactgatagaaggttc
ttccaaaaggtttttgatgatgctcaaataagtatggaggaatacgaggtgttgaaggat
ctgatgcttccactaggacgagtctcgcaatttgccacgcaaagtggaggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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