KEGG T05604: 112509637

Cynara cardunculus var. scolymus (artichoke): 112509637

Entry

112509637         CDS       T05604

Name

(RefSeq) structural maintenance of chromosomes protein 6B

K22804

structural maintenance of chromosomes protein 6

Organism

ccav Cynara cardunculus var. scolymus (artichoke)

Brite

KEGG Orthology (KO) [BR:ccav00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112509637
DNA repair and recombination proteins [BR:ccav03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    SMC5-SMC6 complex
     112509637

SSDB

Motif

Pfam:

SMC_N AAA_23 AAA_15 AAA_13 AAA_29 SbcC_Walker_B AAA_21 SMC_hinge Crescentin Ehrlichia_rpt ABC_tran DUF6611

Other DBs

NCBI-GeneID:

112509637

NCBI-ProteinID:

XP_024970471

Position

LG 3:314234..331660

AA seq 1055 aa
MADARVFNAPDRALQAGVITKVRLENFMCHSHMEIDLGDRVNFITGQNGSGKSAILTALC
IAFGCRAKSTDRATTLKEFIKTGCSYALVHLEIKNQGEDAFKHDAYGDVIILERRITEST
STSVLKDHQGKKVATRREEIRELVEHFNIDVENPCVVMSQDKSREFLHSGNDKDKFKFFF
KATLLSQVDDLLKSVKDNLDKANGEVLELERSIAPVEKELNELQGKIKSMEHIEEISQQV
QLLTKKCAWSLVYDIDKQMHEETARIRKLEERIPQCQARIDQKIAKVEELQDRLNKKKAQ
SAIMMENTSKARKRKNELEEKLSLATKERIELEQEYGRRSDNIGKMAKRIKLLEQQISDV
NEQHMKDTQAEEFEMEKKLKEFQDEINVADLEFQRLKKIEDDLSESLGIARDELRMITSE
LDDYAKKISDSQRRIRELRLNQTNKVTAFGGYKVSNLLQAIERNHHRFKKPPIGPIGAHV
ALIHGDKWAVAVENAIGKLLNAFIVTNHKDSLLLRSCAREANYHHLQIIIYDFSIPRLQI
PNHMLPQTNHPTTISVIQSDTPTVVNVLVDMGGAERQVLVRDYEMGTTVAFDQRISNLKE
VYTTEGHRMFSRGSAQTILPPGKNARTGRLCSSYDDQIKSFEREAIHMQELAQQAQGKKR
SFNERLQNLQDELQIAKRRRVGAEKHLMSKNLGLEDLKNSYAAEAITSSVSSVDELQHEV
SKVQHDKTEGEILLEKIQERLKEAEAKANELKVSFEELRESAKADINALEEATRQLTQIE
EDLRSAEAEKRHYEGLMVQKVHQRIEDAKQQFQDLENERKVSYEKASIICPESEIEGLGG
CGETSSEQFQAHLKRLKLRLEQESQRHQESIDELRMLYDEKERKIKKQRQTYKAFREKLC
TIHVALDKRWSKFQRNATLLKRQLTWQFNGHLRKKGISGHIKVSYEEQKLSIEVKMPQDS
STSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTILEF
ALAQGSQWIFITPHDISMVKHDDRIKKQQMAAPRS

NT seq 3168 nt +upstreamnt +downstreamnt
atggcagatgctagggttttcaatgcaccagacagagctctccaagcaggcgttatcacc
aaagtccgattagagaacttcatgtgtcatagtcatatggaaattgatttgggtgaccgt
gtcaatttcatcactggtcaaaacggaagtggaaagagtgctatacttacggctttgtgt
attgcgtttggttgtcgagccaaaagtacggacagagcaaccacattgaaggagtttata
aagactggttgcagctatgctcttgttcatttggaaattaagaatcagggggaggatgct
tttaagcatgacgcatatggagatgtcataatattagagcgcaggatcactgagtcaacc
agcactagcgtccttaaagatcatcaagggaaaaaggtcgccactagaagagaggaaatc
cgtgaacttgtggaacattttaacatcgatgttgagaatccttgcgtagtaatgagccag
gacaagagcagagagtttttgcattcagggaatgataaagataaattcaagttctttttc
aaggctacacttttaagtcaagtggacgatctactaaaaagtgtcaaggacaatcttgat
aaagcaaacggtgaggttctagagcttgaaaggtcaatagcacctgtagagaaggaattg
aatgagttgcaagggaagattaaaagcatggaacatattgaagaaatttctcagcaggtg
caattgttaaccaaaaaatgtgcatggtcattggtatatgacatagacaagcagatgcac
gaagagactgcgaggattagaaaactggaagaacggatacctcagtgtcaagctcgaatt
gatcagaaaatcgcaaaagtagaagaattgcaggatcgtttgaacaaaaagaaagctcag
agtgccattatgatggaaaacacttcgaaagcaaggaaaagaaagaatgaattggaagag
aaactttctttggctacaaaggagaggattgaactagagcaagaatatggccgcagaagt
gacaacattggtaagatggctaagcgaatcaaattacttgagcagcaaatcagcgatgtc
aatgagcaacatatgaaggacacacaggctgaagaatttgagatggagaaaaaactgaaa
gagtttcaagatgagatcaatgttgctgacttagagtttcaaagattgaagaaaattgag
gatgatttgtcagaaagtttagggattgcaagggatgaacttagaatgatcacttctgag
cttgatgattatgcaaagaagatcagtgatagtcagcgtcgcattcgcgaactgcgattg
aatcagacaaacaaggtcacagcatttggaggatataaagtttccaatcttctacaggct
atcgagaggaaccaccacagattcaaaaagccccccattggtcctataggagcgcatgtg
gcgttaattcatggcgacaaatgggctgttgctgtcgaaaatgccattggcaagttgctt
aatgctttcatagtgacaaatcataaagattcacttttattgagatcatgtgctagagaa
gcaaactaccaccaccttcagatcatcatatatgatttttctataccaaggttgcaaatt
ccaaatcacatgcttccccagacaaatcaccctactacgatttcagtaatacaatctgac
actccaacagttgtaaatgtattggttgatatgggtggggctgagagacaagtgcttgta
agagactatgaaatgggaactaccgttgcttttgaccaaaggatttcaaatctgaaggag
gtttacacaacagagggtcatagaatgttttctcgtggttcagcacaaaccattctacct
cctgggaagaatgcaaggactgggcgtctctgtagttcatatgatgatcaaattaaaagt
tttgaaagagaggcaatacacatgcaagaactagctcaacaagctcagggaaagaaaagg
agtttcaatgaacggcttcagaatcttcaggatgaactacaaattgcgaagagacgtcgt
gtgggtgcagagaaacatttaatgtcaaagaatcttgggctagaggatttgaagaattca
tatgctgcagaagcgataacttcctccgtgtctagtgttgatgagctccagcatgaagtt
tcgaaagtacaacatgataaaaccgaaggtgagattttgcttgagaagattcaggagaga
ttgaaggaagccgaagctaaagcaaatgaacttaaagtttcatttgaagagctacgtgaa
tcagcaaaagcagacatcaacgctctagaagaagcaacccgccagctgactcagattgaa
gaggatctgcgttctgcagaagcggaaaaacgtcattatgaaggacttatggtgcagaaa
gtccatcagaggattgaggatgctaaacaacaatttcaggatttggaaaatgagcgaaag
gtaagttatgaaaaggcctctatcatatgtcctgagagtgagattgaaggcttgggagga
tgtggtgaaacaagctcggagcagttccaagcccaccttaaaaggctaaaactgcgactt
gagcaagaaagccagaggcatcaggaatctattgatgaacttcggatgttgtatgatgag
aaagagcgtaagattaagaaacaacggcaaacttacaaagcttttagagagaaactttgt
acaattcatgtggctcttgacaaacgatggagcaagtttcagagaaatgcaactctttta
aagagacagctgacgtggcagtttaatggtcatctccggaaaaaggggattagtggacac
attaaagttagttatgaggagcagaagctttcgatcgaggtaaagatgccccaagattca
tcgacaagcaatgtacgagatacaagagggctatcgggaggagagcggtcgttttcaacg
ctatgctttgcactagctcttcatgagatgacagaagctccatttcgagctatggatgag
tttgatgtttttatggatgctgtgagtcggaaaatcagcttggacacaatactggaattt
gctctggcacaaggttcacagtggatatttattacacctcatgacataagcatggtaaaa
cacgacgacaggatcaaaaagcaacaaatggcggctcctaggtcttga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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