KEGG   Cynara cardunculus var. scolymus (artichoke): 112512332
Entry
112512332         CDS       T05604                                 
Name
(RefSeq) probable RNA-dependent RNA polymerase 1
  KO
K11699  RNA-dependent RNA polymerase [EC:2.7.7.48]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccav03036]
    112512332
Enzymes [BR:ccav01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.48  RNA-directed RNA polymerase
     112512332
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Gene silencing
   RNA interference (RNAi) pathway
    RDRC (RNA-directed RNA polymerase complex)
     112512332
SSDB
Motif
Pfam: RdRP
Other DBs
NCBI-GeneID: 112512332
NCBI-ProteinID: XP_024973986
Position
LG 5:complement(28266347..28273619)
AA seq 1116 aa
MGMTVNVFGFPNLVSADIIKAALEQHTGLGTIVALEVRKSNGGSRAYAKVQFTTRERVDY
ILDLASRKRLWYGSSYLKAWEVDTDIVQKPRHFALDMDGITLHFGCQVSKETLQVLCKMR
NSVVKFGFGLRRLYFNVSYPTISYKLQLSYDNIWQVQLHRPRGLAASFLVIQLYGAPRIS
QKVEDNIFNYYREIPDDQWVRATDFSPSFSIGQSSHLCLELSHGVEIPNLGRYFPYYEES
NRPFNLVTGHSFSQNLDLVPIVGPARGSNLPYKIIFKVCSLVQHGCIPGPVLDANFFELL
DPARRDIASIDYVLDKLLYQKDCIYDPVRWITQEYRRNNRLRTPTISLDAGLVYVRRVQI
TPSKVYFCGPEVNVSNRVLRNFATYIDDFLRVSFLDEELEKLYSTDLVPRATNRSEESRT
GIYKRILSILRDGIVIGCKKFEFLAFSSSQLRDNSTWMFASSNTLTAADIREWMGKFNSI
KNVAKYAARLGQSFGSSKESLSVAPYEVEKIPDIEVVRGGTKYVFSDGIGKISXEFASRV
SJKCGYDFIPSAFQIRYGGYKGVVAIDPTSSKKLSLRTSMCKFDSDNTKLDVLAISKYQP
CYMNRQIITLLSTLGVRDHVFEKKQKEAVDLLNAILXEPMKAEEALELMSPGENTNILKE
MLACGYKPNAEPFLSMMLQVFRATKLLELRTKARIFVPRGRSMMGCLDETRTLAYGEVFV
QFSCSRRRVLGDDFSGGSSNSCRIVTGKVVVAKNPCLHPGDVRVLRAVDVPQLRHMVDCV
VFPQKGHRPHPNECSGSDLDGDIYFVCWDPDLIPPRQIEPMDYTPAPSVQLDHDVTIEEV
EEYFTNYIVNDSLGIIANAHTVFADREPTKAMAEPCVELAKLFSIAVDFPKTGVPAVIPA
NLRVKEYPDFMEKPNKTTYESQNVIGKLFREVKDISPQDSPVSPFTRVVAFQTYDAEMEV
HGFEEYLDEAFDFKTEYDYKLGNLMDYYGIKTEAELLSGSIMKMSRSFDRRNDAEVVGLA
VKSLRKEARKWFRSGRGESDAENDDVYAKASAWYHVTYHPDYWGRYNEDMTRDHFLSFPW
CVHDKLIEIKKRRSKLRRYSNTDSLQKQFLNNLTLL
NT seq 3351 nt   +upstreamnt  +downstreamnt
atgggtatgacagtaaacgtgtttggattccccaatttagtatctgcagatataatcaag
gcagctctggagcaacatactggtctggggacaattgttgctctagaggttagaaaatca
aatggagggtcaagagcgtatgcgaaagtgcaatttacaaccagggaaagagtagattac
attttggacctggctagtcgtaagcgtttgtggtatggttcatcttatttgaaggcttgg
gaagtggatactgacattgttcaaaagcctaggcattttgccttggacatggatggtata
acccttcattttggttgccaggtttcaaaggagactttgcaagtgctctgtaaaatgcga
aattcagtagtgaaatttgggtttggactaaggaggttatactttaatgtttcatatccc
accatttcttacaagctgcaactctcatatgataatatctggcaagtgcagctacatcgt
ccacgtggccttgccgcaagttttcttgttattcagctatatggtgcccctcgaatttct
cagaaagttgaagacaacatttttaactattatagggaaattcctgatgatcagtgggtt
agggcaactgacttttctccatctttctccattggacaatcttctcatctatgtttggag
ctttcccatggtgttgaaatcccaaaccttggtcgctactttccatattatgaagaaagt
aatcgtccatttaacttggtgactggtcatagtttttctcagaatttggatctagttccg
atagtgggtcctgcccggggttcaaatctgccatataaaataatttttaaggtctgctcc
ttggttcagcatggttgcatcccggggccagttcttgatgctaatttctttgagttgttg
gatccagcaagaagagacattgcctccattgattatgttctggataaactcttatatcaa
aaagattgtatttatgatcctgtaaggtggataacccaggaatacagaagaaacaatagg
ttaaggacgccgactatctcattagatgctggtcttgtatatgtcaggagggttcaaatt
acaccatcaaaggtgtatttytgtgggccagaggttaatgtgtctaatcgtgttttacgt
aattttgcaacatatattgatgattttcttcgtgtatcatttcttgatgaggaactggag
aagctgtattcaacagatttggtccctcgtgccactaatcgaagtgaggaaagcagaact
ggcatttataaaaggattttgtcaattcttagggatggcatcgttatcggctgtaagaag
ttcgaatttcttgctttctcatcaagtcagttacgggataattccacatggatgtttgct
tcaagtaatacacttactgctgctgatataagggagtggatgggtaagtttaatagtata
aaaaacgttgccaaatacgctgctaggcttggtcaatcttttggttcatcaaaggaaagc
ttaagtgttgcaccgtatgaagttgaaaaaattcctgatatagaagttgttagaggcggt
acyaaatatgttttttctgatggaattgggaaaatatctgytgaatttgctagccgtgtt
tccmttaaatgtggctatgactttattccatccgcctttcaaattcgttatggtgggtac
aagggtgtcgtggctatagatccaacctcatcaaagaaattgtcattgagaacgagcatg
tgcaagtttgactcagacaacacaaagttagatgttcttgcaataagcaagtatcaacct
tgctatatgaatcgacagatcataactcttctttctacccttggggttagggatcacgtc
tttgagaagaagcaaaaagaagcagtagacctactcaatgctatcttaagkgagccgatg
aaggcagaagaggcattagagttgatgtctcctggagagaacaccaacattctcaaggaa
atgctggcgtgtggatataagcctaatgctgaaccatttctctcaatgatgctgcaagtt
tttcgtgcaacaaagttgttggaattgcgtactaaagcgaggatatttgttcctagggga
agatcaatgatgggatgcctggatgaaacccgaacacttgcatatggggaagtatttgtg
caattttcttgttcaagaagaagggttctgggtgatgattttagtggaggcagctcaaac
agttgcagaattgttactgggaaagtcgtggttgctaaaaacccatgtttgcatcctggt
gatgtacgagtcttgagggctgttgacgttccacaattgcgccatatggtggattgtgtt
gtttttccacagaaaggacacaggcctcatccaaatgaatgctcaggaagtgatttggat
ggagatatttactttgtctgttgggaccctgatctaattccgcctaggcaaatcgaacca
atggattatactccagcaccaagtgtgcaactggatcacgatgttactattgaggaagtc
gaagagtatttcacgaactatatagtcaatgacagcttaggaatcattgcgaatgcccac
acagtctttgcagacagggaacccacgaaagcaatggccgaaccttgtgtagagcttgca
aagctgttctcaattgctgtggacttcccaaagaccggggttcccgcggtgataccggca
aatctccgggtgaaggagtatccggatttcatggaaaagcccaataaaaccacgtatgaa
tcacaaaatgtgatcgggaagctcttccgggaagtgaaagacatctctccacaagacagt
cccgtcagtccgtttacgagggtcgtggcatttcaaacatatgatgctgaaatggaagta
cacggctttgaggaatacctcgatgaagcatttgatttcaaaaccgaatacgattacaag
ttgggtaatctgatggattactacggcatcaagaccgaagccgaactactcagtgggagt
atcatgaaaatgtcgagatctttcgacaggaggaacgatgctgaagtggtcggtttagcc
gtgaagtccttgaggaaggaagctaggaaatggtttaggagtggaagaggagaatcggat
gctgaaaatgacgatgtttatgcaaaagcatcggcttggtatcatgtcacctatcatcct
gattactggggtcgatacaatgaggatatgacacgagatcatttcctgagtttcccgtgg
tgcgttcacgacaaactcatcgaaatcaagaaacgcagatcaaaactcagacggtattcc
aatactgattcgcttcaaaagcagttcctcaataacctgactcttctatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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