KEGG   Cynara cardunculus var. scolymus (artichoke): 112512643
Entry
112512643         CDS       T05604                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 6A-like
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03020  RNA polymerase
ccav03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112512643
  09124 Replication and repair
   03420 Nucleotide excision repair
    112512643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccav03021]
    112512643
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112512643
Transcription machinery [BR:ccav03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     112512643
  RNA polymerase III system
   RNA polymerase III
     112512643
  RNA polymerase I system
   RNA polymerase I
     112512643
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      112512643
SSDB
Motif
Pfam: RNA_pol_Rpb6 DUF1676
Other DBs
NCBI-GeneID: 112512643
NCBI-ProteinID: XP_024974477
Position
LG 5:17156459..17159902
AA seq 146 aa
MADEEYEMDGAYDDEPMEPEPEEGAEEDVEGENKEDELPDPLLADNEEKEEQEQEQAERP
RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRMKKIPFTIRRHL
PDGSNEDWGVDELIVEDSWKRQVGGD
NT seq 441 nt   +upstreamnt  +downstreamnt
atggcggatgaagaatatgagatggacggagcatatgatgacgagccaatggaacctgag
cctgaagaaggagcagaggaagatgttgaaggagagaataaagaagatgaattaccagat
cctcttctagctgacaatgaagaaaaggaagaacaagaacaagaacaagcagaacgacct
aggaaaacatcaaaatatatgaccaagtatgaaagggctagaatcttgggtacccgtgct
ctgcagatcagcatgaatgctcctgtcatggttgaattggagggtgagactgacccactt
gagattgccatgaaggagcttcgcatgaaaaagataccattcaccattcgtagacacctg
ccagacggaagtaatgaagattggggagtggatgagttgattgtggaagactcttggaag
agacaagttggtggcgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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