KEGG   Cynara cardunculus var. scolymus (artichoke): 112517295
Entry
112517295         CDS       T05604                                 
Name
(RefSeq) nuclear pore complex protein NUP205 isoform X1
  KO
K14310  nuclear pore complex protein Nup205
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    112517295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112517295
   03036 Chromosome and associated proteins [BR:ccav03036]
    112517295
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     112517295
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    112517295
SSDB
Motif
Pfam: Nup192 RNAseD_HRDC_C
Other DBs
NCBI-GeneID: 112517295
NCBI-ProteinID: XP_024980449
Position
LG 8:4380962..4408310
AA seq 1883 aa
MVSAKQLLSIIESTLLGSTPPSPSQRIELIHAIRHSLPSLKSLLSFPPPKPSDRAQVESK
EVRLPDSGPIPLDDQDVQIALKLSDDLHLNEIDCVRLLVSANQEWGLLGRGPLDILRLAA
GLWYTERRDLITALYTLLRAIVLDQGLEADLLADILKYVEDLINNGLRQRLISLIKELNR
EEPAGLGGPNSERYILDPRGALVERRAVVCRERLILGHCLVLSLLVVRASPKEVKDVFTT
LKDSAGDIGGCTDIVKNQITYSLLFSLIISLISDALSASPDKMSILAQDVSFRHDFQETV
MAIGNDQMIEGCMHCVRLAWAVHLMIIQDVTDARETTNDVRNISSCLEVVFSSNVFQYLL
NTVLRTPAYQNDDEDMIYMYNAYLHKLITSFLSHPLARDKVKETKEKAMTALSPYKMSGS
HDYVLDGNMQSQQTTESAPQTFVSLLEFVSEIYEKEPELLSGNDVLWTFVKFAGEDHTNF
QTLVAFLKMLSTLASSEEGASKVYELLQGRTFRSISWSTLFDCLSIYEEKFKQSLQSAGP
ILPEFQEGDAKALVAYLSVLRKVVENGNPIERKAWFPDIEPLFKLLSYENVPPYLKGALR
NSISTFIHVSPNLKDTIWGFLEQYDLPVVVGPQVGHGTQMMASQVYDMRFELNEVEARSE
HYPSTISFLNLLNALIAEERDAADRGRRFIGIFRFIYDHVFGPFPQRAYADSSEKWQLVV
ACLQHFQMILSMYDIKDEDIDVVVSQSQLSAPQSTPLQLQLPVIELLKDFMSGKTVFRNI
MGILLPGVDAIIADRTNHTYGLLLEKAVLLSLEIIILVLEKDLSVSDFWRPLYQPFDVIL
SQDHNQIVALLEYIRYDFLPQIQLRSIKIMSILSSRMVGLVPLLLKSNSVSLLVEDYAAC
LELRSEGCQVIENSCDDPGVLIMQLLIDNIGRPAPNITHFLLKFDLDSPVERTVLQPKFN
YSCLKVVLDILEMLPKPDVNALLHEFGFQLLYELCSDPLTCGPTIDLLSTKKYRFFVKHL
DNIGVAPLPKRNSTQPLRISSLHQRAWLLKLLALELHVGNATSSSHREVCHSIVGHLFGR
GETEYDSDNKILHPLLQSSPEDTASRAIGRCKVLELLEIIQFRSPDTTVKHSEVLSHIKF
GPVADDILGNPATYEKGGVYYYSERGDRLIDLNAFRDTLWQKCNLDNPQLSSFGSEVELT
EVRNNVQQLLRWAWKHNKNLEEQAAQLHMLTGWSQIVEVSASRRISLMENRSEILFLLLD
TSLNASSSPDCSLKMAVMLTQVSITCMAKLRDERFVSPSVLNSDTVTCLDVIMTKRLSNG
ACHSILFKIMMAILRHDTSEALRRRQYTLLLSYFQYCQHILDPDVPTTVLQSLLIDEQDS
GDLDLEKIDQDQAELAHANLSILRKEAQSILDLAIKDATQGSESGKIMALFVLDAMICID
HEKFFLGQLQSRGFLRSCLMNISNVSYQDNMHSIDPLQRLCALEAELALLLRISHKYGKS
GAQILFSMGAFEHIASCMTHNMHIKGNLRRFDTSFGKDSFADVHRQRMIISPLLRLVFSL
TSLVESSDFFEVKNKVVREVIDFVKGHQLLFDQVLHQDVSDADELAMEQINLVVGILSKV
WPYEEGAEYGFVQGLFGLMHTLFSRDSTFLSSAQSDFQKQRKSELSAFRLCFSLSSYLYF
LVKKKSLRLQVSNNSTDYSALVGQQQPTLSLLGYLLNSVTTALENAAEEKSILLNKIQDI
NELPRQEVDEIINMCVLEDQVASSDNIQKRRYITMVEMCRIAGNRDRLITLVLLLAENLL
NIFLIHFQNSSSSSSSESGEAVKALTYGSKEEAVEDLDSFCSKLVPILERLEVLREDKVG
HNLKVFQRLASSLKELSIQKLTL
NT seq 5652 nt   +upstreamnt  +downstreamnt
atggtgtcagctaagcaactgctctctatcatcgagtctacactcttaggctccactcct
ccatcgccgtcgcagaggattgagctcattcatgctattcgtcactcccttccatctctc
aagtctctcctgtcatttccgcctccgaagccttctgacagagcacaagttgagtcgaaa
gaagttaggcttcctgattcaggaccaatcccactcgacgatcaggatgttcaaattgct
cttaagctgagtgatgatctccatctcaatgagatagactgtgtgcgactgcttgtttct
gccaatcaagagtggggattacttgggcgtgggccattggacattttacgtcttgcagcg
gggctttggtatacagagagaagagatttaataacagcactttatacactgttacgggca
attgtgcttgatcagggacttgaggctgatcttctagctgacattttaaaatatgttgaa
gatctaattaataatgggcttcgacaacggctgatttctctaataaaggaactaaatcga
gaagaaccagctggtcttggtgggcctaattctgagcgctatattctcgaccctaggggt
gctcttgtggaaaggcgagctgttgtttgcagggagagactcattcttggtcactgtctt
gttctatcgctgttggttgtacgtgcaagcccaaaagaagtaaaagatgtttttacgact
ttgaaagatagtgcaggggacattggtggctgtactgacattgtaaagaaccagatcacg
tacagtcttcttttttctcttataatttcattgatatcagatgctctgagtgcatcacca
gacaagatgtctatcttggcacaggatgtttcatttaggcatgatttccaggaaaccgtg
atggctattgggaatgatcagatgattgagggctgtatgcactgtgttagacttgcatgg
gctgtgcacttgatgataatacaagatgtaactgatgcaagggagacaactaatgatgtg
agaaatataagttcgtgcctggaagttgttttctcgagcaacgttttccagtatttgctc
aacacagttcttcgaacaccagcctatcagaatgatgacgaggatatgatctacatgtat
aatgcgtacttgcacaagctgataacatcctttctgtctcatccacttgctagggacaag
gtgaaagaaacaaaggagaaggctatgactgctcttagtccgtacaaaatgtctggttca
catgattatgttctggatggtaacatgcaatctcagcaaactactgaatctgccccccaa
acttttgtctctctcctggagtttgttagtgaaatctatgagaaagaacctgaactatta
tctggcaatgatgtcctgtggacatttgtaaagtttgctggagaggatcacactaatttt
cagacacttgtggcatttttgaagatgcttagtacgttggcttcaagtgaggagggtgct
tccaaagtgtacgagttactgcagggcagaacgtttcgctctatttcctggagcactttg
tttgattgcttatctatttatgaggagaagttcaagcaatcccttcaaagtgcagggcca
atattaccggagtttcaagagggagatgcaaaagctcttgttgcttatctatctgttctt
cgaaaggttgtcgagaatgggaaccctattgaaagaaaggcatggtttcctgatattgag
ccgttatttaaacttcttagttatgaaaatgtgcctccttatcttaagggtgctttgcgt
aattcgatatcaactttcattcatgtttctccaaacttgaaagacactatttggggtttc
cttgagcagtatgatttaccagtagtcgttggacctcaagttgggcatggtacacaaatg
atggcctctcaggtttatgatatgaggtttgagttaaatgaagtagaagcaagaagtgag
cattacccatccacaatctcattcctaaatctgttaaatgctcttattgctgaagaaagg
gatgcagctgatagaggacgtaggtttataggcatcttcaggttcatatatgatcatgtg
tttgggccatttccccaaagggcctatgcagattcttctgagaaatggcaattagttgtt
gcatgtctccaacattttcaaatgatattgagtatgtatgacataaaagatgaagatatt
gacgttgtggtcagtcagtctcagctgtcggcaccacaatcaactccactgcagttgcag
cttcctgtcatagaattgctcaaagacttcatgagtgggaagactgtgtttcgaaatatt
atgggtattcttttgcctggagtggatgctataattgctgaccggaccaatcatacttat
ggtttacttctagaaaaagctgtgctcctatctctggaaattataatccttgtcttggag
aaggatttatcagtttctgatttttggcgtcccctataccagcctttcgatgttatactt
tctcaagatcataatcagattgtagctcttttggaatacatcagatatgattttcttccg
caaattcaactacgttccataaaaataatgagcatcttaagttctcgcatggttggcctt
gttccgttgctactaaaatccaattctgttagtcttctggttgaagattatgctgcttgt
ctggagctaagatctgaagggtgtcaagttatagaaaacagctgtgatgatccgggcgtg
cttataatgcaacttctcattgataacattggtcgcccagcccccaatataacacatttc
ttgctgaagtttgacctcgattcccctgtagagaggacagtgttacagccaaaattcaac
tacagttgtttgaaggttgtacttgatattctggaaatgctaccaaagcctgatgtcaat
gcattgcttcatgaattcggatttcagctgctttacgaattatgttcggatccactcaca
tgtggcccaaccattgatcttcttagtaccaagaagtatcgattttttgtcaagcatctg
gataacattggtgttgcaccactaccaaaaagaaatagcactcagccacttcgaatcagc
tctctgcatcagagagcgtggctgttgaagcttttagcacttgaattgcatgttggcaat
gcaacatcttccagccaccgagaagtgtgtcacagcattgttggtcatttgtttgggcga
ggtgaaaccgaatatgacagtgataataaaattcttcaccccctccttcagagtagtcct
gaagatactgcaagcagagccattggcaggtgtaaggtattagaattgcttgaaataatc
cagttcagatctccagatacaacggtgaagcattctgaagttctttctcacataaaattt
ggaccagtggccgacgatatactcgggaatccagcaacatatgaaaagggaggtgtttat
tactactcggaacgaggggatcggttgattgacctaaatgctttccgagacactctttgg
cagaaatgcaatcttgacaatccacagctgagttcctttggcagtgaagttgaactgacc
gaagtgagaaataacgttcagcaattactgcgatgggcttggaaacacaacaagaacctt
gaagagcaggctgctcaactccatatgttgacaggatggtcacaaattgttgaggtttca
gcttcaagaaggatatccttaatggaaaatcgatctgaaatattgtttctgttgcttgac
acatctttaaatgcttctagttctccagattgttcgttaaagatggcggtgatgttaact
caggtttcaattacatgcatggcaaaactgcgcgatgagaggtttgtcagcccaagtgtc
ttgaattctgacacagtcacatgtcttgatgtgattatgacaaagcgactgtcaaatggt
gcatgtcactctatcctttttaagattatgatggcaattctgagacatgatacttcagaa
gcattgaggagacgccaatacacattgcttctaagctacttccagtactgtcagcacata
ctggatccagacgttcctactactgtcctgcaatcgttgttgatagatgagcaagatagt
ggagatttggatcttgagaagattgaccaggatcaggccgaactggcccatgcaaactta
tctatcctaagaaaagaagctcagtcaattttagatttggctattaaagatgcaactcaa
ggcagtgaatcgggaaagataatggccctctttgttctggatgcgatgatttgtattgac
catgaaaagtttttcttaggtcagcttcaaagcagaggctttctgaggtcttgcctcatg
aacatcagcaatgtttcatatcaggataacatgcattctatagatccattacaacgcttg
tgtgctcttgaggcagaacttgctttgctattgagaattagccacaagtatggtaaatca
ggggctcagattcttttctctatgggtgcatttgagcatattgcttcatgcatgacacac
aacatgcacatcaaggggaacctaagacgtttcgacactagtttcgggaaagattcattt
gccgatgttcacagacaaagaatgattatatctccattattgcgattggtgttctctttg
acttcattggttgaatcatcggacttttttgaggtgaagaataaagttgttcgtgaagtg
atagactttgtcaaaggtcatcaactacttttcgatcaagttcttcaccaagatgtttct
gatgctgatgaattggcaatggaacagattaaccttgttgttggtatacttagcaaggtt
tggccatacgaggaaggtgctgagtacggttttgttcaaggactttttggattgatgcac
actcttttttcacgtgattcaacatttctttcttcagctcaatcagattttcagaaacag
aggaagtctgaattgagtgcatttcgtctgtgctttagcctgagctcttatctctacttt
cttgttaaaaagaaatcattgagacttcaggtttccaacaattcaactgattatagtgca
ttggtgggacagcagcaaccgacgttaagtttgcttggttatcttcttaactccgtgacc
actgctcttgaaaatgccgccgaggaaaaatctatattgcttaacaagattcaagacata
aacgaactaccgcgccaagaggtggatgaaattattaacatgtgtgttcttgaagatcaa
gttgcttcatcagacaatattcaaaaaaggaggtacattacgatggtggaaatgtgccgg
attgctggaaatagggatcggcttatcacgctggtgcttctgcttgcagagaacttgttg
aacatttttctcatccatttccaaaacagttcatcatcatcatcatctgaatctggtgaa
gctgtaaaagcacttacatatggttcaaaggaagaagctgtagaagacctagattcattt
tgttcaaagcttgttccaattttggaaagacttgaagtgctaagggaggataaagttggt
cataacctgaaagtgttccagagattagcaagttctctcaaggaactcagtattcaaaag
ttaacactctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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