KEGG   Cynara cardunculus var. scolymus (artichoke): 112521713
Entry
112521713         CDS       T05604                                 
Name
(RefSeq) probable polygalacturonase At3g15720
  KO
K01184  polygalacturonase [EC:3.2.1.15]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav00040  Pentose and glucuronate interconversions
ccav01100  Metabolic pathways
Module
ccav_M00081  Pectin degradation
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    112521713
Enzymes [BR:ccav01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.1  Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
    3.2.1.15  endo-polygalacturonase
     112521713
SSDB
Motif
Pfam: Glyco_hydro_28 Pectate_lyase_3 Pectate_lyase_4
Other DBs
NCBI-GeneID: 112521713
NCBI-ProteinID: XP_024986477
Position
LG 11:complement(9307518..9314921)
AA seq 377 aa
MSQWHSREIARPFDLVLVFQTESHIQDFRMVVFLSIFCISFGLKTANATSFDVTLYGAKG
DGKTDDSDLLGNITAPKTIEGWKGCDTSGQLLLFGSVQGLTAYGPGQFDGYGSIWWPRSA
RLDGPSCNCPSMLRFQNCNGLRLSGTTHINSPKSHIHINGCQDVQIGNLRILAPEDSANT
DGIDISQSSHVLIYHSIIGTGDDCVAIGDGTYDIHVNGISCGPGHGISVGSLGRDGSFAA
VEQVYVKNCSIYGTQNGLRIKTVPFGKGYARGIIYEDIRLHNVGNPIIIDQHYCLNTENH
YCPAPSKADAVQVSNVTYININGTSATKQAITFDCSEKVKCTEINTNRVRITGEDVVAYC
KNTQGNFIKTTPYIACN
NT seq 1134 nt   +upstreamnt  +downstreamnt
atgtcacagtggcattcaagagagattgctagaccttttgatctagtccttgtttttcaa
accgaaagccatattcaggattttcgaatggtggtgtttttaagcattttctgcatttca
tttggtctgaaaaccgcaaatgcaaccagttttgacgtaacattgtacggtgcaaagggt
gacgggaagacagacgattccgatcttttgggcaacattactgcacccaagactatcgaa
ggatggaaaggttgtgatacgagcggccagctgttactttttggatcggtacaaggactc
accgcatatggacctggccaatttgatggctatggttccatctggtggccgagaagtgca
cgcttggatggtccgtcctgtaattgcccatcgatgttacgttttcagaactgtaacggg
cttcgactgagtggtacaacacatataaacagtccaaagagccatattcacatcaatggt
tgtcaagatgtacaaattggaaatcttcgaattttagcacctgaagacagtgcgaatact
gatggaatcgacatcagtcaatcgtcacatgttcttatatatcactctataattggaacc
ggtgatgattgtgtagctattggcgatggcacttacgatatccatgtgaacgggatctct
tgtgggcctggtcatggcataagcgtcggaagccttgggagggacggtagttttgcggcg
gtggaacaagtatatgtaaaaaattgtagcatctatggaacgcaaaacgggttacgaatc
aagactgtgccctttggaaaagggtatgctcgggggatcatatatgaggacattcgtctc
cacaatgttggaaatccaattataatcgatcaacattactgccttaacacagagaatcat
tattgccctgcaccatcaaaggcagatgcagtacaagtgagcaatgtaacgtatataaac
ataaatgggacttcggcgacgaaacaagcaattacttttgattgtagcgagaaggttaag
tgtactgagatcaacaccaacagagtccgaatcactggagaagatgttgttgcttactgc
aaaaatactcaaggaaattttatcaaaacgaccccttatattgcttgcaattag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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