KEGG T05604: 112522503

Cynara cardunculus var. scolymus (artichoke): 112522503

Entry

112522503         CDS       T05604

Name

(RefSeq) RNA helicase aquarius isoform X1

K12874

intron-binding protein aquarius

Organism

ccav Cynara cardunculus var. scolymus (artichoke)

Pathway

ccav03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:ccav00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112522503
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112522503
Spliceosome [BR:ccav03041]
Complex B
  Other components
   Prp19-related factors
    112522503
Complex C
    112522503

SSDB

Motif

Pfam:

Aquarius_N_1st Aquarius_N_2nd AAA_11 AAA_12 Aquarius_N_3rd AAA_19 AAA_30 ResIII UvrD-helicase AAA_22 UvrD_C_2 AAA SLFN-g3_helicase AAA_16 GPHH

Other DBs

NCBI-GeneID:

112522503

NCBI-ProteinID:

XP_024987444

Position

LG 12:6556416..6570926

AA seq 1553 aa
MTKVYGTGVFDFRRHRVAEYPVTVGGSDQTVPERPPESKPGTNLPSSMTLVEIQRDRLTK
IADANWSKTSTNSEKPPFSAELVKEIYETELLVKEEGGKMRRTVPLQRVMILEVSQYLEN
YLWPNFDPEASSFEHVMSMILMINEKFRENVAAWICFYDRKDMFKEFLERVLCLKEGRSL
SIAEKTNYLLFMINAFQSLEDDIVSKKVMRLASLHCWHSLSFGRFQMELCLNPDLIKKWK
RIAKKAKEAKKRGETFDISMMLEVKFLRNLIEEFLEVLDSKVFYHDDGRGGSGIHGFEQI
NEASILYCERFMEFLIDLLSQLPTRRYFKPLVADVAVVAKCHLSVLYRHEKGKLFAQLVD
LLQYYEGFEIDNNLGRQMTDDEVLQAHYERFQAFQLLSFKKIPKLRELALANIGAIHKRV
DLSKKLSVLSPDELRDLVCSKLKLVSKNDPWTERVDFLIEVMVSFFEKQQSQKEAINALP
LYPNEQIMWDESLVPSINYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDI
QEAVPHLLAYINNEGEPAFRGWSRMAVPVKEFKITEVKQPNIGEVKPSSVTAEVTFSISS
YRAQIRSEWNALKEHDVLFLLCIRPSFEPLSADEAANASVPQRLGLQFVRGCEIIEMRDE
EGTLMNDFTGRIKRDEWKPPKGELRTVTVALDTAQYHMDVSAIAEKGAEDVYGTFNILMR
RKPKENNFKAILESIRDLMNETCIVPDWLHDIFLGYGNPSAAQWTNMPDLLETVDFKDTF
LDADHVRECFSAYQVMFTNSDGTENLNPGPPFRINVPRNLKGNAHALPGNKSTTASVDVA
TKDIADFEKEKLIVEAYMPPDPGPYPQDQPKQNSVRFTPTQVGAIISGIQPGLTMVVGPP
GTGKTDTAVQILNVLYHNCPSQRTLIITHSNQALNDLFEKIMERDVPARYLLRLGQGEQE
LATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWE
QFLAVCAKNQDKPAFVRDKFPFTEFFSNTLQPVFSGKSFEEDMHAAKGCFRHLKTVFQEL
EECRAFELLKSTVDRANHLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQIL
EIETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGI
PYIELNAQGRARPSLAKLYNWRYRDLGDLPYVKENPFFHRANAGFSFDYQLVDVPDYHGK
GETAPSPWFYQNEGEAEYLVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVLNRRCAPY
DFIGLPHKVATVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLIVAMSRARLGLYVFCRRS
LFEQCYELQPTFQLLLQRPDLLGLNLHEIAPSTDRLVDDTGPMHLVSDVDEIAGIVNFRM
HQVYQARMISHQFSDYSGQTGRTAAQNGHDFPSEHDEMGTDLQDLPSGDQMDTETPNVDD
HASEDMQVDNKPNETSQLETAPEGENMPPESGSNVEVIVDEKNESVQEDDSNV

NT seq 4662 nt +upstreamnt +downstreamnt
atgacgaaagtctacggaactggagtattcgacttccggcgccaccgtgttgctgaatac
cccgttaccgtcggcggttccgaccaaacagttccggagaggccgccggaatcaaaaccc
ggcaccaatttgccaagctccatgactcttgttgaaatccagcgggaccggctgactaag
attgcggatgcgaactggtcgaaaacgtcaacaaacagtgagaaacctccgttcagtgcg
gagctggtgaaggagatttatgagactgagttgttggtgaaggaggagggcgggaagatg
aggagaacggtgccattgcagagggttatgattcttgaagtcagtcagtacttggagaat
tacctctggccgaattttgatcccgaggcttcttcgtttgagcatgtcatgtccatgatt
ctcatgattaacgagaagtttcgagagaatgttgctgcttggatatgcttttatgatagg
aaagatatgtttaaggaatttcttgagagggttctctgcttgaaggagggaagaagcctg
agtattgcagagaagacaaattacctactttttatgattaatgccttccagagcctggag
gatgatatagtaagcaagaaagtcatgagattggctagtcttcattgctggcatagtcta
tcgtttggtcgttttcagatggagctttgtcttaatccagatttgattaaaaaatggaaa
agaattgcaaaaaaagcgaaggaggcaaagaaacgaggggaaacttttgatatttcaatg
atgctagaagtgaagttcttgaggaacctcattgaagaatttttggaggtactcgattcc
aaagtattttaccatgatgatggcagaggagggtccggcattcatggatttgaacaaatc
aatgaagcttcaatcttgtattgtgagaggtttatggaattcttaattgatcttttgagc
cagcttccaaccaggagatactttaaacctcttgttgctgatgttgccgtggtcgcgaaa
tgtcatttgagtgttctctatagacatgaaaaaggcaagctctttgcgcagttggttgac
ctgctacagtactatgaaggtttcgagattgataataacttggggagacaaatgaccgat
gatgaggtgcttcaagcccattatgaacgctttcaagcttttcagcttctttcatttaaa
aagatacccaagctgagagaacttgcacttgcgaacattggggcgattcataaacgtgtt
gatctatcaaagaaattgtctgttctttctcctgatgaattgagggacttggtctgcagt
aagcttaaattggtttcaaagaatgatccatggactgaaagggttgattttcttattgaa
gtcatggtctcattttttgagaagcagcagtctcaaaaagaagccataaatgctctgcca
ctgtatccaaatgaacagattatgtgggatgaaagccttgttcctagcatcaactactct
ggggagggttgcctggcacttccaaaactgaatttgcaatttctgacccttcatgattat
cttcttagaaattttaacctcttccgacttgaatctacgtatgagattcgggaggacatt
caggaagctgttccacatcttcttgcttatattaataatgaaggggaacctgctttccgt
ggttggtcaagaatggctgtacctgttaaagaatttaagattactgaagtgaagcaaccg
aatattggggaagtaaagccgtcatctgttaccgcagaggttacttttagcatttccagt
tacagagcacagataaggtcagaatggaatgccctaaaggagcatgatgtactctttttg
ctttgtatccgtccatcatttgaaccccttagtgctgacgaagcagcaaatgcatctgtt
ccacaaagacttggccttcaatttgtacgaggatgtgaaattattgagatgcgtgatgag
gagggaactctaatgaatgatttcacaggaagaattaagcgggacgagtggaaacctcca
aaaggtgaattaagaactgtgacggttgcccttgatactgcacaatatcatatggatgtt
agtgctattgctgagaaaggtgcagaagatgtttatggtacattcaatatcttgatgagg
aggaaaccaaaggaaaacaattttaaagcaatcttggagtctataagagatcttatgaat
gaaacttgtattgttcctgactggttgcatgacatctttttgggctatggaaatccttct
gcagctcagtggaccaatatgcctgatctccttgagaccgtagattttaaagatactttt
ctagatgctgatcatgttagagaatgtttttcagcttatcaggtcatgtttacaaattca
gatggtacagaaaacctgaatcctgggcccccgtttcggatcaatgtacccagaaatctg
aaaggaaatgctcatgctctccctggaaacaagtccacaacagcttcagttgatgttgca
acaaaagacattgctgattttgagaaagaaaaacttattgttgaggcctatatgcctcct
gatcctggtccatatcctcaagatcagccaaagcagaactctgttagatttactcccaca
caggttggagcaataatttcagggatacaaccaggattgacaatggtcgtgggtccacct
ggtactggaaagactgatactgcagtccagatattgaacgtactttatcacaattgccct
tctcagaggacattgataattacccactcaaatcaggctttgaacgacctctttgaaaaa
ataatggagagggatgtgccagcccgttatcttctccgtcttggtcaaggtgagcaagaa
ctagcaactgatcttgacttcagtcgtcaaggccgagtcaatgcaatgcttgtgcgacgt
ttagagctgcttagtgaagttgagaggcttgcaagatctttacaactgcccgaggatgta
ggctatacttgtgaaactgctggatacttttggttgcttcatgtttactcacgctgggaa
cagtttctagctgtttgtgccaagaatcaagataaaccagcgtttgtcagggataagttt
cccttcaccgagtttttctccaacacactacagccggttttcagtgggaaatcttttgaa
gaagatatgcatgctgctaaaggttgttttcgtcaccttaagactgtcttccaggagctt
gaagaatgcagagcatttgaattgctgaagtcaacagttgaccgagcgaatcaccttatg
acaaagcaggccaagattgtggcaatgacttgcactcatgcagctttaaaaagaaaggat
tttctgcagttgggtttcaagtatgataacctgctgatggaagaaagtgcacaaatatta
gaaatcgagactttcatcccaatgttactccagaggcaagaagatggctatgctagactt
aaacggtgcattttgattggtgatcatcatcagctgcctccagttgtgaagaatatggct
ttccaaaagtatagtcacatggatcaaagtttatttacaaggtttgttaggttgggaatt
ccttatatcgagctgaatgcccagggtagagccagaccaagtttagctaagctttataat
tggagatatagggatctaggtgatcttccttatgtgaaggagaatcctttttttcacaga
gcgaatgctggattctcttttgattatcagttggtggatgtgcctgattaccatgggaaa
ggtgaaacagctccttctccttggttctatcaaaacgagggggaggcagaatatcttgtt
agcgtttatatctatatgcggttattagggtatcccgcaaataaaatatccattctgaca
acgtataatggccagaaacttctaatacgtgatgttcttaacagaagatgcgctccctat
gattttattggccttccacacaaggttgcaacagtcgacaagtttcaaggtcagcagaat
gattttattctactgtctcttgtgaggactcgatttgtgggacaccttcgtgatgttaga
agattgatagttgcaatgtcacgtgcccgattgggactttatgtattttgtcgccgctca
ctgtttgagcaatgttatgaactgcaacccacgtttcagcttctacttcagaggcctgac
ctccttggtctcaatctgcatgagattgcaccatctacagatcgtctcgttgatgacact
ggacccatgcaccttgtgagtgacgtcgacgaaatagctgggattgtcaactttagaatg
catcaagtgtatcaggcaagaatgattagtcatcagttctcagattattctggacaaaca
ggaagaacggccgcgcaaaatggtcatgattttccttccgaacatgatgagatgggaact
gatttacaggacttgccaagtggggatcaaatggacacggaaacaccaaatgttgatgat
cacgccagtgaggatatgcaagttgataacaagccaaacgaaacaagtcaacttgaaact
gctcctgaaggtgagaatatgcctccagagagcggttcaaatgtggaagtaattgtagac
gaaaaaaatgaatctgttcaagaggatgattcaaacgtataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (15)   
   Pfam (15)   
All databases (29)   

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