KEGG   Cynara cardunculus var. scolymus (artichoke): 112522915
Entry
112522915         CDS       T05604                                 
Name
(RefSeq) 30S ribosomal protein 2, chloroplastic
  KO
K13126  polyadenylate-binding protein
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015  mRNA surveillance pathway
ccav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112522915
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112522915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112522915
   03041 Spliceosome [BR:ccav03041]
    112522915
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     112522915
   mRNA cycle factors
    Stress granule specific factors
     112522915
Spliceosome [BR:ccav03041]
 Complex C
  Other components
   Complex C specific factors
    112522915
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_5 DbpA PH_20 Ribosomal_S8
Other DBs
NCBI-GeneID: 112522915
NCBI-ProteinID: XP_024988019
Position
LG 12:complement(11442548..11445120)
AA seq 251 aa
MATISSSIISSTSYLHHHSTSKSFKIQQPKFTPTLSQTSLRFTISNPRHPTRLLSVAEEA
PATAVTYDPSSEAARRLYVGNIPRTTNNDELHKVFEEHGAIEKVEVMYDKYSGRSRRFGF
VTMKTVDDANAAIEKLNGTEIGGRKIKVNVTEKPLNGVGFSVLQAEETPFVDSPYKLYVG
NLAKTVTSDSLKTFFSEKGNVVGAKVSRVPGTSKSSGFGFVSFSSEEEVEVAISSFNDAV
LEGQKIRVNKA
NT seq 756 nt   +upstreamnt  +downstreamnt
atggccacaatttcatcctccataatatcatctaccagctaccttcatcaccactcaacc
tctaaatccttcaaaattcaacaacccaaattcacccccaccctttctcaaacctctctc
agatttacaatttcaaaccctagacaccctaccagacttctttctgttgccgaggaagcg
cccgccaccgccgtgacgtacgacccctcgtcggaagccgccaggcgactctatgttggt
aacatccctcgcacaaccaacaatgatgaactccacaaggtttttgaagaacatggtgcc
attgagaaagttgaggtaatgtatgataagtactcgggaaggagtagacgattcgggttt
gtaacaatgaagaccgttgatgacgcaaatgctgctatcgagaagctaaacggcacggaa
attggagggcgtaaaatcaaagtaaatgtaacggagaagcccttgaacggggtcggcttc
tcagttctccaagcggaggaaaccccattcgttgacagcccttacaaactttatgtgggc
aatcttgcgaaaacagtgacatcagattcactcaaaaccttcttttccgagaaaggaaat
gttgttggtgccaaagtatctcgagttcccgggacttctaaatcaagcgggttcgggttt
gtttcattctcttcagaagaggaggtggaagtcgccatttcatctttcaacgatgctgtg
cttgaaggacagaagattcgcgtaaataaagcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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