KEGG   Cynara cardunculus var. scolymus (artichoke): 112525484
Entry
112525484         CDS       T05604                                 
Name
(RefSeq) chaperonin 60 subunit beta 4, chloroplastic-like
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112525484
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112525484
   03110 Chaperones and folding catalysts [BR:ccav03110]
    112525484
   03029 Mitochondrial biogenesis [BR:ccav03029]
    112525484
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ccav04147]
    112525484
Enzymes [BR:ccav01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     112525484
Messenger RNA biogenesis [BR:ccav03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     112525484
Chaperones and folding catalysts [BR:ccav03110]
 Heat shock proteins
  HSP60 / Chaperonin
   112525484
Mitochondrial biogenesis [BR:ccav03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    112525484
Exosome [BR:ccav04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   112525484
  Exosomal proteins of other body fluids (saliva and urine)
   112525484
  Exosomal proteins of breast cancer cells
   112525484
  Exosomal proteins of colorectal cancer cells
   112525484
  Exosomal proteins of bladder cancer cells
   112525484
SSDB
Motif
Pfam: Cpn60_TCP1
Other DBs
NCBI-GeneID: 112525484
NCBI-ProteinID: XP_024991399
Position
LG 13:complement(6362168..6368768)
AA seq 546 aa
MVAELIGVTLGPRGRNVVLQNKYGPPRIINDGETVLKEIQLEDPLENVGVKLVRQAGAKT
NDLAGDGSTTSIMLAQGLIAEGVKVIAAGMNPIQISRGIQRTAESLVSELKLMSREVEDH
ELSDVAAISAGNDFEVGSMISEAIQKVGRRGVITIEKGNCAENNLQIVEGMQFDRGYMSK
YFTDRRTMKAEFQDCKLLLVDKIITNPKEMYRILDMAVKGNYPIIIIAEGIEQEALAPVI
RNKLKGVLKAAAVKAPAFGERKSHYLDDIAILTGGTVVRDDAGLTLERVQEDVLGTASEV
VITKDSTLIVTDGSTQAAVKRRVTQLQRLVENTEENFQKKILNERIARLSGGIAIIKVGA
QTQVELKDKQLRMEDAVNATKAAIEEGVVVGGGCCLLRLSLKVNEIKELMDNEEQKIGSD
IFKRALEYPARQIAKNAGVNGSIVVEKVLSNDDMRYGYNAASNQYEDLMAAGIIDPTKVM
RCCIEHAASVAKTFLTSDAVVIDIDGPVAKGMRPPKQTPKPTPTPTPTPTPTPMSMPPSG
IGPMGF
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggtggcagagctgattggagttactttgggtccaaggggtagaaatgtggtgttgcaa
aataagtatggccctccaaggattattaatgatggtgaaaccgttctcaaagagattcaa
ctagaggaccctcttgagaatgttggtgtgaaattagtgagacaagctggtgcaaaaaca
aacgatctagctggtgacggttccaccacatctattatgcttgcccagggcctcattgct
gaaggtgtgaaggttattgcagcaggcatgaatcctatacagatatcacgagggattcag
agaactgcagaatcccttgtctcagaactcaagttgatgtctagagaggttgaggatcat
gagctttcagatgttgctgccatcagcgcaggtaacgattttgaagtgggaagcatgatt
tctgaagctattcaaaaagtaggaaggaggggtgttatcactattgagaaagggaattgt
gctgagaacaatctgcaaatcgtagaggggatgcaattcgatcgtggctacatgtctaaa
tattttactgatcgaagaactatgaaagcagaatttcaagattgcaagttgcttttggtt
gacaaaataattacgaatccgaaggagatgtatagaatattggacatggcagttaaaggg
aactatccaattatcataattgccgagggcattgagcaggaagctctggctccagtaatt
aggaacaaactcaagggcgtactgaaggcagcagctgtcaaagctcctgccttcggtgag
cgcaagagccactacttagatgacattgctatcttgactggaggaactgtggtcagggat
gatgccggtttgacccttgaaagggtccaagaagatgtgcttgggactgcgagtgaggtg
gtcattaccaaagactccacactaatagttaccgatgggagcactcaagctgctgtcaag
agaagggtcactcagctccaaaggcttgttgagaacaccgaagaaaattttcaaaagaaa
attcttaatgaaaggattgcaaggttgtcaggaggaattgctattatcaaggttggagct
caaacacaagttgaactgaaagataaacaattgaggatggaagatgctgtaaatgcaacc
aaggctgctattgaggaaggagtcgtagttggtggtggctgttgtcttttgaggctatct
ttgaaggtgaatgaaataaaagagcttatggataatgaagagcagaagataggatctgac
atattcaaaagagctttggaatatccggcaaggcagatagccaaaaatgctggtgttaat
ggtagcattgttgtagagaaggttttgtccaacgatgatatgaggtatggatacaatgct
gcaagcaaccagtatgaagatctgatggctgccggtatcatagacccaacaaaggtaatg
agatgttgtatagagcatgcagcatcggtggcaaagacatttttgacttctgatgcagtt
gtgattgatatcgatggaccagtggccaaaggaatgagaccgccgaagcaaaccccaaag
ccaacgccaacgccaacgccaacgccaacgccaacgccaatgtcaatgcctccctctgga
attggtccgatgggattttaa

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system