KEGG   Cynara cardunculus var. scolymus (artichoke): 112529174
Entry
112529174         CDS       T05604                                 
Name
(RefSeq) nuclear poly(A) polymerase 4-like isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    112529174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112529174
Enzymes [BR:ccav01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     112529174
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     112529174
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 PI-PLC-C1
Other DBs
NCBI-GeneID: 112529174
NCBI-ProteinID: XP_024996060
Position
LG 16:complement(12015573..12026302)
AA seq 606 aa
MVGSERENGSSPTPPAQKADVKKYGVMNPISYAGPSEVDVQKNALLEKLLMDSGIYESAE
ETARREEVLSRLDKIIKDWVKQLTRQKGYTEKMVEEANGILRTFGSYRLGVHGPNADIDT
LCIGPSYVTREHDFFVILHNILLEMEEVSDLQPVDDAHVPVMKFKFQGISIDLLYASISL
LIVPEDLDISHNSVLYNTDEKTVRSLNGCRVADQILKLIPNVENFCTTLRCLKFWAKRRG
VYSNVTGFLGGVNWALLVAQVCQLYPNAIPSMLVSRFFRVYTHWRWPNPVMLCPIEEDEL
GFNVWDPRKWSRDRTHLMPIITPAYPCMNSSYNVSASTLRVMVEQFHFGNKVCEEIELNK
ANWSALFEPSLFFESYKNYLQVDIIAADADDLLSWRGWVESRLRLLTLKIERDTDGMLQC
HPFPNEYVDTSKPCSHCAFFMGLQRQPGVKVQEGQQFDIRATVDEFKQGVNSYNHWRPGM
DIFVSHVRRRQLPAYIFPEGYKRQRQLRHTPQHSTRTSNGDAERSSSPSSDRRFKRKHDA
SIADIGCGKPKKLSPESAGIAPSSPVIQGLACESPIEQNVVMESEDGANSESMQPPTIRL
SLESTA
NT seq 1821 nt   +upstreamnt  +downstreamnt
atggtgggctctgagagagaaaatggttcttcaccaacaccaccggcacaaaaggcggat
gtgaagaagtatggtgtaatgaacccaatatcatatgctggaccaagtgaggttgatgtt
cagaagaatgcacttttggaaaagcttttgatggactcagggatttatgagagtgcggaa
gaaactgcaaggagagaagaggttctttctcgtctggataagattatcaaagattgggtg
aagcagttaacccgccaaaaaggctacacagaaaaaatggtcgaggaggcaaatggtatt
ttgcgtacctttgggtcttatcgcctaggggtacatggaccaaatgctgatatcgacaca
ttatgcattgggccatcatatgtgactcgagagcatgattttttcgttatactgcataat
attctgttggagatggaagaagtatcagaccttcagccagttgatgatgcacatgttcct
gtgatgaagttcaagtttcaaggaatatctattgatcttctttatgcgagcatatcttta
ttgattgttccagaagatttggacatctctcataattctgtgttgtacaacactgatgag
aaaacggtgcgaagtcttaacggatgtcgggttgctgatcaaattctaaaacttattcca
aatgtagagaacttctgcacaacacttagatgtttaaagttttgggcgaagaggcgtggc
gtttattcaaatgttaccggttttcttggtggtgtaaattgggctcttctagttgctcag
gtatgccagctttatcccaatgcaatacctagtatgctggtttcccgttttttcagagtc
tatacgcattggcgttggccaaacccagtcatgctttgcccaatcgaagaggatgagctt
ggatttaatgtatgggacccacggaaatggtcccgtgaccgaacacatcttatgccaatt
atcactccggcatacccttgtatgaactctagttacaatgtttctgcaagtacccttcgt
gttatggtggaacaatttcatttcgggaataaggtttgcgaggagatcgagttgaacaaa
gcaaattggagtgctctgtttgaaccttctctttttttcgagtcgtataaaaactacttg
caggtagacattatagctgcagatgctgatgatctgctttcatggagaggatgggtggaa
tcccgccttaggttactaactttaaagattgaacgcgatacagatgggatgttacagtgc
caccctttcccaaatgagtatgttgatacatctaagccatgttcccattgtgcgtttttt
atgggccttcagaggcagcctggagtgaaagttcaagaaggccaacagtttgatatccga
gcaacagtggatgagtttaagcaaggggtaaacagttacaatcattggagaccggggatg
gacatcttcgtatctcatgtccgcaggaggcaacttcctgcgtatattttcccagaaggg
tataaacgtcaaagacaattaaggcacactccccagcactctacaagaacctcaaatgga
gatgctgaaagatccagctctccatcctccgataggcgtttcaagaggaagcatgatgct
tctattgcagatattgggtgtggaaaaccaaagaaattgagcccagaaagcgcaggaatt
gctccatcgagcccagtaattcaaggactcgcttgtgagtctccaattgaacaaaatgtg
gtaatggagtcggaggatggagcaaatagtgaatcaatgcagccacccacgataaggttg
agcctggaatcaacggcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system