KEGG   Ruminiclostridium cellulolyticum: Ccel_0304
Entry
Ccel_0304         CDS       T00835                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
cce  Ruminiclostridium cellulolyticum
Pathway
cce03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cce00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Ccel_0304
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cce03019]
    Ccel_0304
   03009 Ribosome biogenesis [BR:cce03009]
    Ccel_0304
Messenger RNA biogenesis [BR:cce03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Ccel_0304
Ribosome biogenesis [BR:cce03009]
 Prokaryotic type
  rRNA helicases
   Ccel_0304
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UvrD-helicase AAA_19 AAA_22 CMS1 Helicase_RecD
Other DBs
NCBI-ProteinID: ACL74691
UniProt: B8I5B1
Position
complement(351792..353420)
AA seq 542 aa
MNNTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVS
ILQLTNPEEAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQILNK
GVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITL
LFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEK
PESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDV
AARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEEHI
GTLILEEELPDEEAFTKAREEAAQWIKANSLKEKAPRSASADSSVKQKRTGQNSKSNRIP
NGRPEYSKRPDGQSRHTGKSASSEQRSERIKSVNTVHSDKQPGRTPVTPIRTAKPPIRSV
SRHVSPNATGLNSPDMRRNSAAAPSVSKVQTRNTSKTESAANNTKANKQPLLKRILHKIF
GN
NT seq 1629 nt   +upstreamnt  +downstreamnt
atgaacaacacatttaatgaattgggcatctcagcccctattttaaaggctattgatgac
atgggctttaaaacccccacagaagtacaaagcaaagcaattcctcatatccttaataat
gaagatttgattgttatgtctaagaccggcagcggtaaaacagccgtcttcggtgtttcc
attctacaactgactaatcccgaggaggcagggccccaaggccttattttgactccagca
agagagctagcagttcaggtggataatgatatccgtaaaatggccaaatatcttaaacat
aagacgacagcgatatatggtcaacataatattaatttagaaactcagattcttaataaa
ggtgtatctattgttactggaacgccgggacgtgtgtttgatcatatcagtcatggtact
ctgtccacaaagaatattcgttttcttgtgcttgatgaagccgacaggatgcttgacatg
ggttttctcgaccaggtagtaaggattgtaaagaccttgcccaaagaaaggataaccctc
ctgttttccgctacaatgcctcccgaaatacataatatatgcaaacggtatatgaacaat
ccagttaccattgaaattgaatcccagactaaaactgtagatactatccatcaggtatac
tacagagttaattataatgaaaagaatactcagttaaaccgccttcttattgtcgaaaag
ccggaaagctgcatgattttctgtaatacgaaagcggctgttgacagggttcagagtttc
ctgggcaagaaaggttattcttcgcgggcccttcacggcgatattccccagagtaaacgc
ctaaacaccatacagcagttcaagcagggaaagtttcacatactggtggcaacagatgtt
gctgcaagaggtattcatatcgaagatctttctttggtaataaactacgatgttcccaat
gacaaggacaactatgttcatagaatcggccgtacaggcagggcaggccatgagggtcgt
gctttttcactggtcacaggtgatgacattataagtctctatgagattgaagaacatata
ggtactttgattcttgaggaggagttgcctgacgaggaggcctttactaaagcacgtgag
gaagcagcccaatggataaaggctaattctttgaaggaaaaagcacctcgctcagcttcc
gcagattcatctgttaagcagaagagaaccggacaaaacagtaaatctaatagaatacca
aatggaaggccggagtattcaaagcgaccggatggacaaagcagacataccgggaaatca
gcttcttctgagcagcgatccgaaaggattaaaagtgttaacacagtacattcagataag
cagcccggcagaactcccgttactcctatcaggactgcaaagccgcctattcgttctgtt
tcaaggcatgtatcacctaatgcaacaggtttaaattcacctgatatgagacgtaactcc
gcagctgctccatccgttagcaaggttcaaactcggaatacttctaagactgaaagtgca
gctaataacacaaaggcaaataaacaacctttacttaaaagaattttacataaaattttc
ggtaattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (31)   

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