KEGG   Clostridium cellulosi: CCDG5_1160
Entry
CCDG5_1160        CDS       T03806                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ccel  Clostridium cellulosi
Pathway
ccel03030  DNA replication
ccel03410  Base excision repair
ccel03420  Nucleotide excision repair
ccel03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccel00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CCDG5_1160 (ligA)
   03410 Base excision repair
    CCDG5_1160 (ligA)
   03420 Nucleotide excision repair
    CCDG5_1160 (ligA)
   03430 Mismatch repair
    CCDG5_1160 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccel03032]
    CCDG5_1160 (ligA)
   03400 DNA repair and recombination proteins [BR:ccel03400]
    CCDG5_1160 (ligA)
Enzymes [BR:ccel01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CCDG5_1160 (ligA)
DNA replication proteins [BR:ccel03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CCDG5_1160 (ligA)
DNA repair and recombination proteins [BR:ccel03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CCDG5_1160 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CCDG5_1160 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CCDG5_1160 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CCDG5_1160 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH zf-NADH-PPase Auto_anti-p27
Other DBs
NCBI-ProteinID: CDZ24277
UniProt: A0A078KP18
Position
I:complement(1250754..1252727)
AA seq 657 aa
MSDPAKRAEELRKLLNYHNYQYYVLDNPEIEDYEYDKLLRELEEIEAAHPELITPDSPTQ
RVGGEALTMFEPVHHEVVMESLQDLFSHDEVREFDKRVREAEKDITYVVEPKIDGLSVSL
EYENGLFVRGSTRGDGVTGEDVTANLKTIRSIPLKLNMPIPFIEVRGEVFMPHERFFKLV
EQQELNDEKPFKNCRNAAAGSLRQKNPKITASRGLDIFVFNIQRIEGVDVELHSKGHELL
KKLGFKVIPDYKICTDIGQVIEEIDKIGERRGKLPYDIDGAVVKVDSYAVRRKLGSTAKF
PRWAAAFKFPPEEKETKLLDIEINVGRTGVLTPTAVLEPVTLAGTTVSRATLHNQDFIDG
LKIAIGDTVIVRKAGEIIPEIIGVAKKGGGDIYKMPTTCPSCGSPVFREEDEAALRCTNA
ECPAQLLRHLIHFASRGAMDIEGLGPAIIEALVSKGLVKSPADLYYLDIERVKEIERMGE
KSAKNLISSIEKSKSAGLARLLYAFGIRNVGQKAAKLIAGRFKTIDRLFNVTVDELTQID
EIGEVIAQSTVDFFKLKSTEHLVERLRFAGVLMEDNTEEVADTRFAGMTFVLTGTLPTYT
RSEASKIIESLGGKVSGSVSKKTTYVLAGEDAGSKLTKAQSLGVPIINEDQFKEMIK
NT seq 1974 nt   +upstreamnt  +downstreamnt
ttgtctgatccagcgaaacgcgcagaagaactgcgcaaactcctaaattatcacaattat
caatattatgttctggataatcctgagattgaggattatgagtatgacaagttgcttcgc
gaacttgaggaaattgaagcagcccatccggaacttataactcctgattccccgacccag
agggtcggcggagaggctcttactatgtttgagccggttcatcatgaggtcgtcatggaa
agtcttcaggatttgttttcccatgacgaggttcgggaattcgataaacgggttcgcgag
gccgagaaagatataacatatgttgttgaaccgaaaatcgatggcctctcggtgtcgctc
gagtatgaaaacgggctgtttgtccgggggtcaacgcgaggcgacggtgtaacgggcgaa
gatgttaccgcgaatctcaaaactattcgctctataccgctaaagctcaatatgccaata
ccgtttattgaagtaaggggcgaggtttttatgccccatgaacgtttttttaagttggtt
gaacaacaggaactcaatgatgaaaagccctttaagaattgccgaaacgctgccgcaggg
tcacttaggcagaagaaccccaagattactgcttcacgtggccttgatatattcgttttc
aatattcagcggatagagggcgtcgatgtagaattacattcaaaaggacatgagcttcta
aaaaagctcggtttcaaggttattccggactataaaatctgcaccgatattggacaggtt
atcgaagaaattgataagattggtgagcggcgcggaaaactgccatatgatatcgatggc
gcagttgtgaaggttgactcttatgcggtaagaagaaaactcggcagcacggcgaaattc
ccgcgctgggcggctgctttcaaattcccgccggaagagaaagaaacaaaactgctcgat
attgaaatcaatgtgggcagaacgggtgtcctgaccccgacagcggtgcttgaaccggtg
acgcttgccggaacaaccgtttcaagggcaacactccacaatcaagattttattgatgga
cttaaaatcgccataggcgatacggttatagttagaaaagcaggagaaataatcccggaa
ataatcggagtcgcgaaaaaagggggcggcgacatatataaaatgccgacaacctgcccg
tcctgcggctcaccggttttccgcgaagaagatgaggcagcgttaaggtgcacaaacgcg
gagtgccccgcccaacttttgcgccatcttatccactttgcttcaagaggagcaatggat
atcgaaggcttaggccctgcgataatagaggcacttgtttcaaaagggttggtcaagtct
cctgccgatctgtattatttggatatcgaaagggttaaggaaatagagcgcatgggtgaa
aaatcggcgaaaaaccttatttcgtcgattgaaaaatcaaagtcggcgggacttgcgcgg
ctgctttacgctttcggtataagaaatgttggtcaaaaggcggcaaagctgattgccggc
cgctttaagacgatagaccggctgtttaacgtaacagtggatgaactgacacagattgat
gaaatcggcgaggtcatagcgcaaagcacagtcgatttctttaaactcaagagcactgag
caccttgtagaacggctccgttttgcaggggttttaatggaagataatacagaagaagtt
gccgatacccggtttgccggtatgacattcgttcttacaggtacactgcccacttacaca
aggagcgaggcttcaaaaatcatagagagcctcggcggaaaggtatcaggcagcgtttct
aaaaaaaccacttatgttctggcaggtgaggacgccggaagcaaactgacaaaggcccag
tcactcggcgttccaataatcaatgaagaccagtttaaagaaatgataaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

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