KEGG   Clostridium chauvoei: BTM20_12535
Entry
BTM20_12535       CDS       T05083                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cchv  Clostridium chauvoei
Pathway
cchv03030  DNA replication
cchv03410  Base excision repair
cchv03420  Nucleotide excision repair
cchv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cchv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BTM20_12535
   03410 Base excision repair
    BTM20_12535
   03420 Nucleotide excision repair
    BTM20_12535
   03430 Mismatch repair
    BTM20_12535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cchv03032]
    BTM20_12535
   03400 DNA repair and recombination proteins [BR:cchv03400]
    BTM20_12535
Enzymes [BR:cchv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BTM20_12535
DNA replication proteins [BR:cchv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BTM20_12535
DNA repair and recombination proteins [BR:cchv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BTM20_12535
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BTM20_12535
   MMR (mismatch excision repair)
    DNA ligase
     BTM20_12535
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BTM20_12535
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT HHH DNA_pol_lambd_f BRCT_2 5_3_exonuc RNA_ligase DNA_ligase_ZBD DUF669 Cdd1 DisA-linker
Other DBs
NCBI-ProteinID: ATD55984
Position
complement(2712193..2714184)
AA seq 663 aa
MDKEQRINELVEELNKYAYEYYSLDNPSVSDKEYDKKYDELKALEKETGYVLPYSPTLRV
GDRVLEGFNKYTHKGRLWSLDKAQSFDEVKDWHNRNVKFVNEMNANGENLPPLRYVVTKK
FDGLTVNLTYDNNGILAVAATRGTGEVGEDVTAQVQTIKSVPLKINCNDVFEVHGEAIMT
TEAFEKYNKTSENPLKNLRNGAAGALRNLNVKETAKRNLSAFFYDIGYKEGTKFKNYQEM
LEFIKAKGFPMDEYVRYCNTMDEVEKEIEYIKNIRFDLNYDIDGVVIAIDDIRTRELLGY
TVKFPKWAIAFKFEAQEVTTKLLDVEWNVGRSGRVGPTAILEPVELAGVTVKRATLNNID
DIRRKGVRIGAEVFVRRSNDVIPEIMGVVEESLEGTIEINVPNICPACGGHVIQQGVHYF
CENTLSCKPQMVKTIVHFASRDAMNIEGFSERTAEQLFEKLDIKSISEVYKLEKESLVTL
EKFGPKKAQNLLDAIEKSKNCELHRFIYALGIPNVGVKTAKDLVNKFKSIEGLKNATFED
LVEVQDVGDIVAKCVMEFFKEEKVISTINELLNLGVNPIFEEKEIIESLFEGKTVVVTGT
LQNYSRGSIKEKLEGFGAKVAGSVSKKTDYVIAGEEAGSKLKKAQELGVKVLSEEEFEEM
IKG
NT seq 1992 nt   +upstreamnt  +downstreamnt
atggataaggagcaacgtataaacgagcttgtagaggaattaaacaagtatgcatatgag
tattactctttagataacccatcggtatcggataaagagtatgataaaaagtatgatgaa
ttaaaggctttagaaaaggaaacaggatatgtattaccatattcaccaacattaagggtt
ggagatagagttttagaaggctttaataaatatacgcataagggtagactttggagttta
gataaagctcaaagttttgatgaagttaaagattggcataatagaaatgtaaaatttgta
aatgaaatgaatgctaatggtgaaaatcttccaccattaagatatgttgtaactaaaaaa
tttgatggcctaacagtgaatttaacctatgataataatggtatattagcagtagctgca
actagaggaactggagaagtgggagaagatgttactgcacaagtacaaacaataaaatca
gtaccattaaaaataaattgcaacgatgtatttgaagtacatggtgaagctataatgact
acagaggcttttgaaaaatataataaaacatcagagaatccgcttaaaaatttaagaaat
ggtgcagcaggagctttaagaaacttaaatgttaaagaaactgctaagagaaatctttca
gctttcttttatgatataggatataaagaaggaactaaatttaaaaattatcaagaaatg
cttgaatttataaaagcaaaaggattccctatggatgagtatgttagatactgtaataca
atggatgaagtagaaaaagaaatagagtatataaaaaatataagatttgatttaaattat
gatattgatggagtagtaattgctatagatgatattagaactagggaattacttggatat
acagttaaatttcctaaatgggcaattgctttcaaatttgaagcacaagaagtaacaaca
aaacttcttgatgtagagtggaatgtaggaagaagtggtagagtaggacctacagcaata
ttagaaccagtagaattagcaggagttactgtaaaaagagcaacattaaataatatagat
gatattagacgaaaaggtgtaagaataggagcagaagtattcgttagaagatctaatgat
gttattccagaaataatgggcgttgtagaagaaagcttagaagggacaatagaaataaat
gtacctaatatatgtccagcttgtggaggacacgtaattcaacaaggagtacattacttc
tgtgaaaatacattatcctgtaaaccacaaatggtaaaaacaatagtacattttgcatca
agagatgctatgaatatagaaggattttcagaaagaacagcagaacagctatttgaaaaa
ttagatataaagtcaatatcagaagtatataaattagaaaaagaatcccttgtaacacta
gaaaagtttggtcctaaaaaggctcagaatcttttagatgctattgaaaaaagtaaaaac
tgtgagttacatagatttatatatgctttaggcataccaaatgtaggtgtaaagacagca
aaggacttagtaaataaatttaaatcaatagagggcttaaaaaatgctacatttgaagat
ttagtggaagtccaagatgtaggtgatatagtggctaaatgtgtgatggagttctttaaa
gaagaaaaggtaattagcacaattaacgaactattaaatttaggggtaaatcctatattt
gaagaaaaagaaataatagaaagtttatttgaaggaaaaactgtagttgtaacaggaacg
cttcaaaattattcaagaggttctataaaagaaaaactagaagggtttggagcaaaagtt
gcaggtagcgttagtaaaaagacagattacgttatagcgggagaagaagccggttcaaaa
cttaaaaaggctcaagagttaggcgttaaagtgctttcagaggaagagtttgaagaaatg
ataaaggggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (34)   

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