KEGG   Coprinopsis cinerea: CC1G_03770
Entry
CC1G_03770        CDS       T01275                                 
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
cci  Coprinopsis cinerea
Pathway
cci03013  Nucleocytoplasmic transport
cci03015  mRNA surveillance pathway
cci03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cci00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CC1G_03770
  09122 Translation
   03013 Nucleocytoplasmic transport
    CC1G_03770
   03015 mRNA surveillance pathway
    CC1G_03770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cci03019]
    CC1G_03770
   03041 Spliceosome [BR:cci03041]
    CC1G_03770
Messenger RNA biogenesis [BR:cci03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CC1G_03770
Spliceosome [BR:cci03041]
 Complex C
  Other components
   EJC/TREX
    CC1G_03770
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CC1G_03770
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 6005402
NCBI-ProteinID: XP_001828976
UniProt: A8N263
Position
1
AA seq 432 aa
MSAQDAEDLIDYEDEHDIVPSGGAAASAGAAGGAGDAGDKKNFSGIHSTGFRDFLLKPEL
LRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSV
LVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAEILRDKTKCPHIVVATPG
RLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHHKQVMMFSATLAKE
IRATCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEAGKNRKLNELLDNLEFNQVVIFV
KSVARAIELDKLLVSCNFPSIAIHSGLQQEERIKRYTAFKAFEKRILVATDIFGRGIDVE
RVNIVVNYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSDTDQQTMASIQSRFEVAVPEL
PDHIDPASYMTS
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgagcgcacaagacgccgaagatcttatcgactacgaggacgagcacgacattgtccca
agcggtggtgcagcagcctcggcaggcgctgctggaggtgctggcgacgcaggggataag
aaaaacttttctggtattcactcaaccggtttcagggatttcctcttgaaacccgaactg
cttcgtgccatttctgatctgggctttgaacatccttcggaagtgcaacaagaatgtatt
ccccaggccgttcttggtatggacgttctgtgtcaagccaagtccggtcacggaaagact
gcagtcttcgttcttgccactctccaacaacttgagcctgtcaatggcgaagtgtcggta
ctcgttctctgccatactcgagagttggcattccaaatcaaaaacgaatacacgcgtttc
gccaaatacatgccggatgttcgcgtcagcaccttctatggaggaactccagtcgcaaag
gatgccgaaatcctgcgcgataaaaccaaatgcccccacattgtcgttgctactcccggt
cgactcaacgccctcgcccgcgacaaagttttggacgccaagaacgtgaagcatttcgtg
ttggacgagtgcgacaaaatgcttgaacagctcgacatgcgccgcgacgtccaggaaatc
ttccgcatgacccctcaccacaagcaagtcatgatgttcagcgccacccttgcgaaggaa
atccgagcgacgtgcaagaagtttatggccaatccccttgaaatcttcgtcgacgatgaa
accaagttgaccctgcacggtttacaacagcactacgtgaagctggaggaagctggaaag
aacaggaagttaaacgaattgctcgacaacctcgaattcaaccaggttgtcattttcgtg
aagtcggttgctcgtgcaattgaactggataagctgcttgtgtcctgtaacttcccttca
atcgccatccactctggattgcagcaagaagaacgtatcaaacgttatactgcttttaag
gctttcgagaagcgtatcctggttgccactgatatcttcggtcgtggtattgatgttgaa
cgagttaacatcgttgtcaattatgattgccctcccgatgccgattcctatcttcaccgc
gttggtcgtgccggccgcttcggtaccaagggtttggcgatcaccttcgtgtcttcggat
acggaccagcaaaccatggcgtccatccaatcccgtttcgaggttgctgttcccgagctt
ccggaccatatcgaccctgccagttacatgacctcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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