KEGG   Clostridium carboxidivorans: Ccar_19280
Entry
Ccar_19280        CDS       T03979                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
cck  Clostridium carboxidivorans
Pathway
cck03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cck00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Ccar_19280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cck03400]
    Ccar_19280
DNA repair and recombination proteins [BR:cck03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Ccar_19280
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Ccar_19280
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 Microtub_bd DUF87 SWI2_SNF2 PIF1
Other DBs
NCBI-ProteinID: AKN32872
Position
complement(4336708..4338693)
AA seq 661 aa
MKEFKIHSKFKPTGDQPQAIDSIVKSINDKEKFQTLLGVTGSGKTFTMANIIERVKKPTL
VLAHNKTLAAQLCSEFREFFPENCVEYFVSYYDYYQPEAYVAQTDTYIEKDASINDEIDK
LRHSATSALLERTDVVVVASVSCIYGLGNPEEYKKLTLSLREGMTKDRDEVLKKLVEIQY
ERNEINFVRGTFRVKGDVLDIFPASSSGKAIRIEFFGDEIDRIKEFDALTGETIGTRKHV
SIFPASHFATSRERLEIAIKSIESELEERVRELTSQDKLLEAQRLKQRTNFDIEMMREVG
YCSGIENYSRILDGRAKGTPPQTLIDYFPEDYLLFIDESHVTIPQVKAMYAGDRSRKESL
VEYGFRLPSAFDNRPLTFNEFEGKLNQVLFVSATPANYELEHSTNVAEQIIRPTGLLDPE
IEVKPIKGQIDDLYKNIVETIKRGYRILVTTLTKKMAEDLSDYFKEMDIKANYLHSGIDT
IQRMEIIRDLRKGEFDVLIGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRA
ARNSESKVIMYADRITDSMGKAISETNRRRKIQMEYNEKHNIVPKTIKKEIREVIEATKV
LEENAQYDSLEEAMEANNENIDLLISKYEKEMKQAAKELQFELAADLRDKILKLKKQKKK
N
NT seq 1986 nt   +upstreamnt  +downstreamnt
atgaaagaatttaaaatacattcaaaatttaagcctacaggagatcaaccacaagctata
gatagtatagtaaaaagtataaatgataaagagaaatttcaaacccttttaggagttaca
ggatcaggtaaaacttttactatggcaaatataattgagcgtgttaaaaaaccaacttta
gttttagcccataataaaaccttggcagctcagttatgttcagagtttagagaatttttt
ccggagaattgcgtagagtattttgtatcttactatgattattatcaacctgaagcctat
gttgctcaaacggatacttatatagaaaaagatgcatctataaatgatgagatagataag
ctaagacattcagctacttctgctttgttagagaggacagatgtagttgtagtagcatcg
gtatcatgcatatatggcttaggaaatccggaagaatataaaaaacttactttatcttta
agagaaggaatgactaaagatagagatgaagttctaaaaaaacttgtagaaatacagtat
gaaagaaatgaaataaattttgtaagaggtacatttagggtaaaaggagatgtacttgac
atatttccagcgtcatccagtggaaaagctataagaatagagttttttggtgatgaaata
gatagaataaaagaatttgatgcattaacgggtgaaactataggaactagaaagcatgtg
tctatattccctgcatcccattttgccacttctagggaaagactggagatagctataaaa
agtatagaatcagaattagaagaaagagtaagagaactcacatctcaagataagcttttg
gaagctcaaagattaaagcagagaacaaattttgatatagagatgatgagagaagtagga
tattgcagcggtattgaaaattattcaaggatattggatggaagagcaaaaggaactcct
cctcaaacacttatagattacttccctgaagattatttactttttatagatgaaagtcat
gttaccattccacaagtaaaggctatgtacgctggagataggtcgagaaaagaatcttta
gttgaatatggattcagattaccttcagcatttgataatagaccacttacatttaatgaa
tttgaagggaagttaaatcaagtactttttgtaagtgcaacacctgcaaattatgaatta
gaacattctacaaatgtggcagaacaaataataaggcctacaggcctattggaccctgaa
attgaagttaagcctattaaaggacagatagatgatttatataaaaatatagtagaaact
ataaaaaggggatatagaattcttgtaacaactcttacaaaaaaaatggcagaggattta
tcggattactttaaagaaatggatattaaagctaattatttgcactctggtatagatact
atacagagaatggaaataataagagatttgagaaagggtgaatttgatgtcttaattgga
ataaatcttttaagggaaggtcttgatatacctgaagttgctttagtagctatacttgat
gctgataaagaaggttttttaaggtctgaacgttctttaattcaaacaataggaagggct
gcaagaaactcagaaagtaaggttattatgtatgcagacagaataactgattctatgggt
aaagcaatatcagaaactaatagaagaagaaaaatacaaatggagtataatgaaaaacac
aatatagtacctaaaaccattaagaaagaaattagagaagtaattgaagctactaaggtt
ttagaagaaaatgcgcaatatgatagtttagaagaagctatggaagctaataatgaaaat
atagatttattaatttcaaaatatgaaaaagaaatgaaacaagcggccaaggagctgcag
tttgaattggcagctgatttaagagataaaatactaaaattaaaaaaacaaaaaaagaaa
aactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (19)   

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